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polycollec
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cc59ae9ab5 |
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masque/shapes/poly_collection.py
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210
masque/shapes/poly_collection.py
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from typing import Any, cast, Iterable
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from collections.abc import Sequence
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import copy
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import functools
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import numpy
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from numpy import pi
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from numpy.typing import NDArray, ArrayLike
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from . import Shape, normalized_shape_tuple
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from ..error import PatternError
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from ..repetition import Repetition
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from ..utils import is_scalar, rotation_matrix_2d, annotations_lt, annotations_eq, rep2key
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from ..utils import remove_colinear_vertices, remove_duplicate_vertices, annotations_t
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@functools.total_ordering
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class PolyCollection(Shape):
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"""
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A collection of polygons, consisting of list of vertex arrays (N_m x 2 ndarrays) which specify
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implicitly-closed boundaries, and an offset.
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Note that the setter for `PolyCollection.vertex_list` creates a copy of the
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passed vertex coordinates.
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A `normalized_form(...)` is available, but can be quite slow with lots of vertices.
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"""
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__slots__ = (
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'_vertex_lists',
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# Inherited
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'_offset', '_repetition', '_annotations',
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)
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_vertex_lists: list[NDArray[numpy.float64]]
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""" List of ndarrays (N_m x 2) of vertices `[ [[x0, y0], [x1, y1], ...] ]` """
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# vertex_lists property
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@property
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def vertex_lists(self) -> Any: # mypy#3004 NDArray[numpy.float64]:
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"""
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Vertices of the polygons (ist of ndarrays (N_m x 2) `[ [[x0, y0], [x1, y1], ...] ]`
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When setting, note that a copy will be made,
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"""
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return self._vertex_lists
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@vertex_lists.setter
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def vertex_lists(self, val: ArrayLike) -> None:
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val = [numpy.array(vv, dtype=float) for vv in val]
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for ii, vv in enumerate(val):
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if len(vv.shape) < 2 or vv.shape[1] != 2:
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raise PatternError(f'vertex_lists contents must be an Nx2 arrays (polygon #{ii} fails)')
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if vv.shape[0] < 3:
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raise PatternError(f'vertex_lists contents must have at least 3 vertices (Nx2 where N>2) (polygon ${ii} has shape {vv.shape})')
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self._vertices = val
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# xs property
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@property
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def xs(self) -> NDArray[numpy.float64]:
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"""
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All vertex x coords as a 1D ndarray
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"""
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return self.vertices[:, 0]
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def __init__(
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self,
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vertex_lists: Iterable[ArrayLike],
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*,
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offset: ArrayLike = (0.0, 0.0),
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rotation: float = 0.0,
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repetition: Repetition | None = None,
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annotations: annotations_t | None = None,
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raw: bool = False,
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) -> None:
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if raw:
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assert isinstance(vertex_lists, list)
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assert all(isinstance(vv, numpy.ndarray) for vv in vertex_lists)
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assert isinstance(offset, numpy.ndarray)
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self._vertex_lists = vertex_lists
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self._offset = offset
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self._repetition = repetition
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self._annotations = annotations if annotations is not None else {}
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else:
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self.vertices = vertices
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self.offset = offset
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self.repetition = repetition
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self.annotations = annotations if annotations is not None else {}
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self.rotate(rotation)
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def __deepcopy__(self, memo: dict | None = None) -> 'PolyCollection':
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memo = {} if memo is None else memo
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new = copy.copy(self)
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new._offset = self._offset.copy()
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new._vertex_lists = [vv.copy() for vv in self._vertex_lists]
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new._annotations = copy.deepcopy(self._annotations)
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return new
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def __eq__(self, other: Any) -> bool:
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return (
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type(self) is type(other)
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and numpy.array_equal(self.offset, other.offset)
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and all(numpy.array_equal(ss, oo) for ss, oo in zip(self.vertices, other.vertices))
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and self.repetition == other.repetition
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and annotations_eq(self.annotations, other.annotations)
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)
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def __lt__(self, other: Shape) -> bool:
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if type(self) is not type(other):
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if repr(type(self)) != repr(type(other)):
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return repr(type(self)) < repr(type(other))
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return id(type(self)) < id(type(other))
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other = cast(PolyCollection, other)
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for vv, oo in zip(self.vertices, other.vertices):
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if not numpy.array_equal(vv, oo):
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min_len = min(vv.shape[0], oo.shape[0])
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eq_mask = vv[:min_len] != oo[:min_len]
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eq_lt = vv[:min_len] < oo[:min_len]
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eq_lt_masked = eq_lt[eq_mask]
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if eq_lt_masked.size > 0:
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return eq_lt_masked.flat[0]
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return vv.shape[0] < oo.shape[0]
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if len(self.vertex_lists) != len(other.vertex_lists):
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return len(self.vertex_lists) < len(other.vertex_lists):
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if not numpy.array_equal(self.offset, other.offset):
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return tuple(self.offset) < tuple(other.offset)
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if self.repetition != other.repetition:
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return rep2key(self.repetition) < rep2key(other.repetition)
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return annotations_lt(self.annotations, other.annotations)
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def pop_as_polygon(self, index: int) -> 'Polygon':
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"""
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Remove one polygon from the list, and return it as a `Polygon` object.
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Args:
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index: which polygon to pop
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"""
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verts = self.vertex_lists.pop(index)
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return Polygon(
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vertices=verts,
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offset=self.offset,
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repetition=self.repetition.copy(),
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annotations=copy.deepcopy(self.annotations),
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)
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def to_polygons(
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self,
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num_vertices: int | None = None, # unused # noqa: ARG002
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max_arclen: float | None = None, # unused # noqa: ARG002
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) -> list['Polygon']:
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return [Polygon(
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vertices=vv,
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offset=self.offset,
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repetition=self.repetition.copy(),
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annotations=copy.deepcopy(self.annotations),
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) for vv in self.vertex_lists]
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def get_bounds_single(self) -> NDArray[numpy.float64]: # TODO note shape get_bounds doesn't include repetition
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mins = [numpy.min(vv, axis=0) for vv self.vertex_lists]
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maxs = [numpy.max(vv, axis=0) for vv self.vertex_lists]
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return numpy.vstack((self.offset + numpy.min(self.vertex_lists, axis=0),
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self.offset + numpy.max(self.vertex_lists, axis=0)))
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def rotate(self, theta: float) -> 'Polygon':
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if theta != 0:
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for vv in self.vertex_lists:
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vv[:] = numpy.dot(rotation_matrix_2d(theta), vv.T).T
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return self
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def mirror(self, axis: int = 0) -> 'Polygon':
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for vv in self.vertex_lists:
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vv[:, axis - 1] *= -1
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return self
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def scale_by(self, c: float) -> 'Polygon':
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for vv in self.vertex_lists:
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vv *= c
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return self
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def normalized_form(self, norm_value: float) -> normalized_shape_tuple:
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# Note: this function is going to be pretty slow for many-vertexed polygons, relative to
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# other shapes
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meanv = numpy.concatenate(self.vertex_lists).mean(axis=0)
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zeroed_vertices = [vv - meanv for vv in self.vertex_lists]
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offset = meanv + self.offset
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scale = zeroed_vertices.std()
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normed_vertices = zeroed_vertices / scale
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_, _, vertex_axis = numpy.linalg.svd(zeroed_vertices)
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rotation = numpy.arctan2(vertex_axis[0][1], vertex_axis[0][0]) % (2 * pi)
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rotated_vertices = numpy.vstack([numpy.dot(rotation_matrix_2d(-rotation), v)
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for v in normed_vertices])
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# Reorder the vertices so that the one with lowest x, then y, comes first.
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x_min = rotated_vertices[:, 0].argmin()
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if not is_scalar(x_min):
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y_min = rotated_vertices[x_min, 1].argmin()
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x_min = cast(Sequence, x_min)[y_min]
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reordered_vertices = numpy.roll(rotated_vertices, -x_min, axis=0)
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# TODO: normalize mirroring?
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return ((type(self), reordered_vertices.data.tobytes()),
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(offset, scale / norm_value, rotation, False),
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lambda: Polygon(reordered_vertices * norm_value))
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def __repr__(self) -> str:
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centroid = self.offset + numpy.concatenate(self.vertex_lists).mean(axis=0)
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return f'<PolyCollection centroid {centroid} p{len(self.vertex_lists)}>'
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