Add support for gds paths
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d53c9487ff
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783c0c0844
@ -15,8 +15,9 @@ import logging
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from .utils import mangle_name, make_dose_table
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from .. import Pattern, SubPattern, GridRepetition, PatternError, Label, Shape
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from ..shapes import Polygon
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from ..shapes import Polygon, Path
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from ..utils import rotation_matrix_2d, get_bit, set_bit, vector2, is_scalar
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from ..utils import remove_colinear_vertices
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__author__ = 'Jan Petykiewicz'
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@ -25,6 +26,13 @@ __author__ = 'Jan Petykiewicz'
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logger = logging.getLogger(__name__)
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path_cap_map = {0: Path.Cap.Flush,
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1: Path.Cap.Circle,
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2: Path.Cap.Square,
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#3: custom?
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}
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def write(patterns: Pattern or List[Pattern],
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filename: str,
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meters_per_unit: float,
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@ -81,12 +89,8 @@ def write(patterns: Pattern or List[Pattern],
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structure = gdsii.structure.Structure(name=pat.name)
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lib.append(structure)
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# Add a Boundary element for each shape
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structure += _shapes_to_boundaries(pat.shapes)
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structure += _shapes_to_elements(pat.shapes)
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structure += _labels_to_texts(pat.labels)
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# Add an SREF / AREF for each subpattern entry
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structure += _subpatterns_to_refs(pat.subpatterns)
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with open(filename, mode='wb') as stream:
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@ -255,13 +259,17 @@ def read(filename: str,
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for element in structure:
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# Switch based on element type:
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if isinstance(element, gdsii.elements.Boundary):
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args = {'vertices': element.xy[:-1],
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}
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if use_dtype_as_dose:
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shape = Polygon(vertices=element.xy[:-1],
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dose=element.data_type,
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layer=element.layer)
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args['dose'] = element.data_type
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args['layer'] = element.layer
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else:
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shape = Polygon(vertices=element.xy[:-1],
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layer=(element.layer, element.data_type))
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args['layer'] = (element.layer, element.data_type)
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shape = Polygon(**args)
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if clean_vertices:
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try:
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shape.clean_vertices()
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@ -270,6 +278,33 @@ def read(filename: str,
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pat.shapes.append(shape)
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if isinstance(element, gdsii.elements.Path):
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if element.path_type in path_cap_map:
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cap = path_cap_map[element.path_type]
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else:
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raise PatternError('Unrecognized path type: {}'.format(element.path_type))
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args = {'vertices': element.xy,
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'width': element.width,
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'cap': cap,
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}
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if use_dtype_as_dose:
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args['dose'] = element.data_type
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args['layer'] = element.layer
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else:
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args['layer'] = (element.layer, element.data_type)
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shape = Path(**args)
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if clean_vertices:
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try:
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shape.clean_vertices()
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except PatternError as err:
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continue
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pat.shapes.append(shape)
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elif isinstance(element, gdsii.elements.Text):
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label = Label(offset=element.xy,
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layer=(element.layer, element.text_type),
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@ -425,19 +460,31 @@ def _subpatterns_to_refs(subpatterns: List[SubPattern or GridRepetition]
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return refs
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def _shapes_to_boundaries(shapes: List[Shape]
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) -> List[gdsii.elements.Boundary]:
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# Add a Boundary element for each shape
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boundaries = []
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def _shapes_to_elements(shapes: List[Shape],
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polygonize_paths: bool = False
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) -> List[gdsii.elements.Boundary]:
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elements = []
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# Add a Boundary element for each shape, and Path elements if necessary
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for shape in shapes:
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layer, data_type = _mlayer2gds(shape.layer)
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for polygon in shape.to_polygons():
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xy_open = numpy.round(polygon.vertices + polygon.offset).astype(int)
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xy_closed = numpy.vstack((xy_open, xy_open[0, :]))
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boundaries.append(gdsii.elements.Boundary(layer=layer,
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data_type=data_type,
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xy=xy_closed))
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return boundaries
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if isinstance(shape, Path) and not polygonize_paths:
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xy = numpy.round(shape.vertices + shape.offset).astype(int)
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width = numpy.round(shape.width).astype(int)
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path_type = next(k for k, v in path_cap_map.items() if v == shape.cap) #reverse lookup
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path = gdsii.elements.Path(layer=layer,
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data_type=data_type,
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xy=xy)
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path.path_type = path_type
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path.width = width
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elements.append(path)
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else:
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for polygon in shape.to_polygons():
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xy_open = numpy.round(polygon.vertices + polygon.offset).astype(int)
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xy_closed = numpy.vstack((xy_open, xy_open[0, :]))
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elements.append(gdsii.elements.Boundary(layer=layer,
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data_type=data_type,
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xy=xy_closed))
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return elements
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def _labels_to_texts(labels: List[Label]) -> List[gdsii.elements.Text]:
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@ -10,3 +10,4 @@ from .circle import Circle
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from .ellipse import Ellipse
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from .arc import Arc
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from .text import Text
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from .path import Path
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344
masque/shapes/path.py
Normal file
344
masque/shapes/path.py
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@ -0,0 +1,344 @@
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from typing import List, Tuple
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import copy
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from enum import Enum
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import numpy
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from numpy import pi
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from . import Shape, normalized_shape_tuple, Polygon, Circle
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from .. import PatternError
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from ..utils import is_scalar, rotation_matrix_2d, vector2
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from ..utils import remove_colinear_vertices, remove_duplicate_vertices
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__author__ = 'Jan Petykiewicz'
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class Path(Shape):
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"""
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A path, consisting of a bunch of vertices (Nx2 ndarray), a width, an end-cap shape,
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and an offset.
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A normalized_form(...) is available, but can be quite slow with lots of vertices.
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"""
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_vertices = None # type: numpy.ndarray
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_width = None # type: float
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_cap = None # type: Path.Cap
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class Cap(Enum):
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Flush = 0 # Path ends at final vertices
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Circle = 1 # Path extends past final vertices with a semicircle of radius width/2
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Square = 2 # Path extends past final vertices with a width-by-width/2 rectangle
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# width property
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@property
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def width(self) -> float:
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"""
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Path width (float, >= 0)
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:return: width
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"""
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return self._width
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@width.setter
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def width(self, val: float):
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if not is_scalar(val):
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raise PatternError('Width must be a scalar')
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if not val >= 0:
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raise PatternError('Width must be non-negative')
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self._width = val
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# cap property
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@property
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def cap(self) -> 'Path.Cap':
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"""
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Path end-cap
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:return: Path.Cap enum
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"""
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return self._cap
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@cap.setter
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def cap(self, val: 'Path.Cap'):
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self._cap = Path.Cap(val)
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# vertices property
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@property
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def vertices(self) -> numpy.ndarray:
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"""
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Vertices of the path (Nx2 ndarray: [[x0, y0], [x1, y1], ...]
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:return: vertices
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"""
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return self._vertices
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@vertices.setter
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def vertices(self, val: numpy.ndarray):
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val = numpy.array(val, dtype=float)
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if len(val.shape) < 2 or val.shape[1] != 2:
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raise PatternError('Vertices must be an Nx2 array')
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if val.shape[0] < 2:
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raise PatternError('Must have at least 2 vertices (Nx2 where N>1)')
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self._vertices = val
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# xs property
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@property
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def xs(self) -> numpy.ndarray:
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"""
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All vertex x coords as a 1D ndarray
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"""
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return self.vertices[:, 0]
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@xs.setter
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def xs(self, val: numpy.ndarray):
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val = numpy.array(val, dtype=float).flatten()
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if val.size != self.vertices.shape[0]:
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raise PatternError('Wrong number of vertices')
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self.vertices[:, 0] = val
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# ys property
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@property
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def ys(self) -> numpy.ndarray:
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"""
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All vertex y coords as a 1D ndarray
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"""
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return self.vertices[:, 1]
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@ys.setter
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def ys(self, val: numpy.ndarray):
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val = numpy.array(val, dtype=float).flatten()
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if val.size != self.vertices.shape[0]:
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raise PatternError('Wrong number of vertices')
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self.vertices[:, 1] = val
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def __init__(self,
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vertices: numpy.ndarray,
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width: float = 0.0,
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cap: 'Path.Cap' = Cap.Flush,
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offset: vector2=(0.0, 0.0),
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rotation: float = 0,
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mirrored: Tuple[bool] = (False, False),
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layer: int=0,
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dose: float=1.0,
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) -> 'Path':
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self.offset = offset
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self.layer = layer
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self.dose = dose
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self.vertices = vertices
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self.width = width
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self.cap = cap
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self.rotate(rotation)
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[self.mirror(a) for a, do in enumerate(mirrored) if do]
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@staticmethod
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def travel(travel_pairs: Tuple[Tuple[float, float]],
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width: float = 0.0,
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cap: 'Path.Cap' = Cap.Flush,
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offset: vector2=(0.0, 0.0),
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rotation: float = 0,
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mirrored: Tuple[bool] = (False, False),
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layer: int=0,
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dose: float=1.0,
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) -> 'Path':
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"""
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Build a path by specifying the turn angles and travel distances
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rather than setting the distances directly.
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:param travel_pairs: A list of (angle, distance) pairs that define
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the path. Angles are counterclockwise, in radians, and are relative
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to the previous segment's direction (the initial angle is relative
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to the +x axis).
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:param width: Path width, default 0
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:param cap: End-cap type, default Path.Cap.Flush (no end-cap)
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:param offset: Offset, default (0, 0)
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:param rotation: Rotation counterclockwise, in radians. Default 0
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:param mirrored: Whether to mirror across the x or y axes. For example,
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mirrored=(True, False) results in a reflection across the x-axis,
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multiplying the path's y-coordinates by -1. Default (False, False)
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:param layer: Layer, default 0
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:param dose: Dose, default 1.0
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:return: The resulting Path object
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"""
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#TODO: needs testing
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direction = numpy.array([1, 0])
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verts = [[0, 0]]
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for angle, distance in travel_pairs:
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direction = numpy.dot(rotation_matrix_2d(angle), direction.T).T
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verts.append(verts[-1] + direction * distance)
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return Path(vertices=verts, width=width, cap=cap,
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offset=offset, rotation=rotation, mirrored=mirrored,
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layer=layer, dose=dose)
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def to_polygons(self,
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poly_num_points: int=None,
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poly_max_arclen: float=None,
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) -> List['Polygon']:
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if self.cap in (Path.Cap.Flush, Path.Cap.Circle):
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extension = 0.0
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elif self.cap == Path.Cap.Square:
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extension = self.width / 2
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else:
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raise PatternError('Unrecognized path endcap: {}'.format(self.cap))
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v = remove_colinear_vertices(self.vertices, closed_path=False)
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dv = numpy.diff(v, axis=0)
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dvdir = dv / numpy.sqrt((dv * dv).sum(axis=1))[:, None]
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if self.width == 0:
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verts = numpy.vstack((v, v[::-1]))
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return [Polygon(offset=self.offset, vertices=verts, dose=self.dose, layer=self.layer)]
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perp = dvdir[:, ::-1] * [[1, -1]] * self.width / 2
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# add extension
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if extension != 0:
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v[0] -= dvdir[0] * extension
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v[-1] += dvdir[-1] * extension
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dv = numpy.diff(v, axis=0) # recalculate dv; dvdir and perp should stay the same
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# Find intersections of expanded sides
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As = numpy.stack((dv[:-1], -dv[1:]), axis=2)
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bs = v[1:-1] - v[:-2] + perp[1:] - perp[:-1]
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ds = v[1:-1] - v[:-2] - perp[1:] + perp[:-1]
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rp = numpy.linalg.solve(As, bs)[:, 0, None]
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rn = numpy.linalg.solve(As, ds)[:, 0, None]
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intersection_p = v[:-2] + rp * dv[:-1] + perp[:-1]
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intersection_n = v[:-2] + rn * dv[:-1] - perp[:-1]
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towards_perp = (dv[1:] * perp[:-1]).sum(axis=1) > 0 # path bends towards previous perp?
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# straight = (dv[1:] * perp[:-1]).sum(axis=1) == 0 # path is straight
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acute = (dv[1:] * dv[:-1]).sum(axis=1) < 0 # angle is acute?
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# Build vertices
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o0 = [v[0] + perp[0]]
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o1 = [v[0] - perp[0]]
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for i in range(dv.shape[0] - 1):
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if towards_perp[i]:
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o0.append(intersection_p[i])
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if acute[i]:
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o1.append(intersection_n[i])
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else:
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# Opposite is >270
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pt0 = v[i + 1] - perp[i + 0] + dvdir[i + 0] * self.width / 2
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pt1 = v[i + 1] - perp[i + 1] - dvdir[i + 1] * self.width / 2
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o1 += [pt0, pt1]
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else:
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o1.append(intersection_n[i])
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if acute[i]:
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# > 270
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pt0 = v[i + 1] + perp[i + 0] + dvdir[i + 0] * self.width / 2
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pt1 = v[i + 1] + perp[i + 1] - dvdir[i + 1] * self.width / 2
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o0 += [pt0, pt1]
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else:
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o0.append(intersection_p[i])
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o0.append(v[-1] + perp[-1])
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o1.append(v[-1] - perp[-1])
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verts = numpy.vstack((o0, o1[::-1]))
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polys = [Polygon(offset=self.offset, vertices=verts, dose=self.dose, layer=self.layer)]
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if self.cap == Path.Cap.Circle:
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#for vert in v: # not sure if every vertex, or just ends?
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for vert in [v[0], v[-1]]:
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circ = Circle(offset=vert, radius=self.width / 2, dose=self.dose, layer=self.layer)
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polys += circ.to_polygons(poly_num_points=poly_num_points, poly_max_arclen=poly_max_arclen)
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return polys
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def get_bounds(self) -> numpy.ndarray:
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if self.cap == Path.Cap.Circle:
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bounds = self.offset + numpy.vstack((numpy.min(self.vertices, axis=0) - self.width / 2,
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numpy.max(self.vertices, axis=0) + self.width / 2))
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elif self.cap in (Path.Cap.Flush,
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Path.Cap.Square):
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if self.cap == Path.Cap.Flush:
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extension = 0
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elif self.cap == Path.Cap.Square:
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extension = self.width / 2
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v = remove_colinear_vertices(self.vertices, closed_path=False)
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dv = numpy.diff(v, axis=0)
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dvdir = dv / numpy.sqrt((dv * dv).sum(axis=1))[:, None]
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perp = dvdir[:, ::-1] * [[1, -1]] * self.width / 2
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v[0] -= dvdir * extension
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v[-1] += dvdir * extension
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bounds = self.offset + numpy.vstack((numpy.min(v - numpy.abs(perp), axis=0),
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numpy.max(v + numpy.abs(perp), axis=0)))
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else:
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raise PatternError('get_bounds() not implemented for endcaps: {}'.format(self.cap))
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return bounds
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def rotate(self, theta: float) -> 'Path':
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self.vertices = numpy.dot(rotation_matrix_2d(theta), self.vertices.T).T
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return self
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def mirror(self, axis: int) -> 'Path':
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self.vertices[:, axis - 1] *= -1
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return self
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def scale_by(self, c: float) -> 'Path':
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self.vertices *= c
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self.width *= c
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return self
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def normalized_form(self, norm_value: float) -> normalized_shape_tuple:
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# Note: this function is going to be pretty slow for many-vertexed paths, relative to
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# other shapes
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offset = self.vertices.mean(axis=0) + self.offset
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zeroed_vertices = self.vertices - offset
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scale = zeroed_vertices.std()
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normed_vertices = zeroed_vertices / scale
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_, _, vertex_axis = numpy.linalg.svd(zeroed_vertices)
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rotation = numpy.arctan2(vertex_axis[0][1], vertex_axis[0][0]) % (2 * pi)
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rotated_vertices = numpy.vstack([numpy.dot(rotation_matrix_2d(-rotation), v)
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for v in normed_vertices])
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# Reorder the vertices so that the one with lowest x, then y, comes first.
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x_min = rotated_vertices[:, 0].argmin()
|
||||
if not is_scalar(x_min):
|
||||
y_min = rotated_vertices[x_min, 1].argmin()
|
||||
x_min = x_min[y_min]
|
||||
reordered_vertices = numpy.roll(rotated_vertices, -x_min, axis=0)
|
||||
|
||||
width0 = self.width / norm_value
|
||||
|
||||
return (type(self), reordered_vertices.data.tobytes(), width0, self.cap, self.layer), \
|
||||
(offset, scale/norm_value, rotation, self.dose), \
|
||||
lambda: Polygon(reordered_vertices*norm_value, width=self.width*norm_value,
|
||||
cap=self.cap, layer=self.layer)
|
||||
|
||||
def clean_vertices(self) -> 'Path':
|
||||
"""
|
||||
Removes duplicate, co-linear and otherwise redundant vertices.
|
||||
|
||||
:returns: self
|
||||
"""
|
||||
self.remove_colinear_vertices()
|
||||
return self
|
||||
|
||||
def remove_duplicate_vertices(self) -> 'Path':
|
||||
'''
|
||||
Removes all consecutive duplicate (repeated) vertices.
|
||||
|
||||
:returns: self
|
||||
'''
|
||||
self.vertices = remove_duplicate_vertices(self.vertices, closed_path=False)
|
||||
return self
|
||||
|
||||
def remove_colinear_vertices(self) -> 'Path':
|
||||
'''
|
||||
Removes consecutive co-linear vertices.
|
||||
|
||||
:returns: self
|
||||
'''
|
||||
self.vertices = remove_colinear_vertices(self.vertices, closed_path=False)
|
||||
return self
|
||||
Loading…
Reference in New Issue
Block a user