Fix marching_cubes for modern skimage

2018-01-15 22:56:45 -08:00 · 2018-01-15 22:56:45 -08:00 · f86ae22e02
commit f86ae22e02
parent 0d1099cd8e
2 changed files with 2 additions and 2 deletions
--- a/gridlock/read.py
+++ b/gridlock/read.py
@ -150,7 +150,7 @@ def visualize_isosurface(self,
        level = grid.mean()

    # Find isosurface with marching cubes
-    verts, faces = skimage.measure.marching_cubes(grid, level)
+    verts, faces, _normals, _values = skimage.measure.marching_cubes(grid, level)

    # Convert vertices from index to position
    pos_verts = numpy.array([self.ind2pos(verts[i, :], which_shifts, round_ind=False)
--- a/setup.py
+++ b/setup.py
@ -17,7 +17,7 @@ setup(name='gridlock',
          'visualization': ['matplotlib'],
          'visualization-isosurface': [
                'matplotlib',
-                'skimage',
+                'skimage>=0.13',
                'mpl_toolkits',
          ],
      },