From f86ae22e02667e6e43bee147c3cec01ccf5ca8fe Mon Sep 17 00:00:00 2001 From: jan Date: Mon, 15 Jan 2018 22:56:45 -0800 Subject: [PATCH] Fix marching_cubes for modern skimage --- gridlock/read.py | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/gridlock/read.py b/gridlock/read.py index ee14879..7f59bef 100644 --- a/gridlock/read.py +++ b/gridlock/read.py @@ -150,7 +150,7 @@ def visualize_isosurface(self, level = grid.mean() # Find isosurface with marching cubes - verts, faces = skimage.measure.marching_cubes(grid, level) + verts, faces, _normals, _values = skimage.measure.marching_cubes(grid, level) # Convert vertices from index to position pos_verts = numpy.array([self.ind2pos(verts[i, :], which_shifts, round_ind=False) diff --git a/setup.py b/setup.py index 7c10134..53b1cf2 100644 --- a/setup.py +++ b/setup.py @@ -17,7 +17,7 @@ setup(name='gridlock', 'visualization': ['matplotlib'], 'visualization-isosurface': [ 'matplotlib', - 'skimage', + 'skimage>=0.13', 'mpl_toolkits', ], },