2017-12-09 18:21:37 -08:00
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'''
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|
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|
Bloch eigenmode solver/operators
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|
This module contains functions for generating and solving the
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|
|
3D Bloch eigenproblem. The approach is to transform the problem
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|
|
into the (spatial) fourier domain, transforming the equation
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|
1/mu * curl(1/eps * curl(H)) = (w/c)^2 H
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|
into
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conv(1/mu_k, ik x conv(1/eps_k, ik x H_k)) = (w/c)^2 H_k
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|
where:
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|
- the _k subscript denotes a 3D fourier transformed field
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- each component of H_k corresponds to a plane wave with wavevector k
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|
- x is the cross product
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- conv denotes convolution
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Since k and H are orthogonal for each plane wave, we can use each
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k to create an orthogonal basis (k, m, n), with k x m = n, and
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|m| = |n| = 1. The cross products are then simplified with
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k @ h = kx hx + ky hy + kz hz = 0 = hk
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h = hk + hm + hn = hm + hn
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k = kk + km + kn = kk = |k|
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k x h = (ky hz - kz hy,
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kz hx - kx hz,
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kx hy - ky hx)
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= ((k x h) @ k, (k x h) @ m, (k x h) @ n)_kmn
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= (0, (m x k) @ h, (n x k) @ h)_kmn # triple product ordering
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= (0, kk (-n @ h), kk (m @ h))_kmn # (m x k) = -|k| n, etc.
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= |k| (0, -h @ n, h @ m)_kmn
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k x h = (km hn - kn hm,
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kn hk - kk hn,
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kk hm - km hk)_kmn
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= (0, -kk hn, kk hm)_kmn
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= (-kk hn)(mx, my, mz) + (kk hm)(nx, ny, nz)
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= |k| (hm * (nx, ny, nz) - hn * (mx, my, mz))
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where h is shorthand for H_k, (...)_kmn deontes the (k, m, n) basis,
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and e.g. hm is the component of h in the m direction.
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We can also simplify conv(X_k, Y_k) as fftn(X * ifftn(Y_k)).
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Using these results and storing H_k as h = (hm, hn), we have
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e_xyz = fftn(1/eps * ifftn(|k| (hm * n - hn * m)))
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b_mn = |k| (-e_xyz @ n, e_xyz @ m)
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h_mn = fftn(1/mu * ifftn(b_m * m + b_n * n))
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|
which forms the operator from the left side of the equation.
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|
2017-12-17 21:33:53 -08:00
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We can then use a preconditioned block Rayleigh iteration algorithm, as in
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|
|
SG Johnson and JD Joannopoulos, Block-iterative frequency-domain methods
|
2017-12-09 18:21:37 -08:00
|
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|
for Maxwell's equations in a planewave basis, Optics Express 8, 3, 173-190 (2001)
|
2017-12-17 21:33:53 -08:00
|
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|
(similar to that used in MPB) to find the eigenvectors for this operator.
|
2017-12-09 18:21:37 -08:00
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|
===
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Typically you will want to do something like
|
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|
recip_lattice = numpy.diag(1/numpy.array(epsilon[0].shape * dx))
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|
n, v = bloch.eigsolve(5, k0, recip_lattice, epsilon)
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|
f = numpy.sqrt(-numpy.real(n[0]))
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|
n_eff = norm(recip_lattice @ k0) / f
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|
v2e = bloch.hmn_2_exyz(k0, recip_lattice, epsilon)
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|
e_field = v2e(v[0])
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|
k, f = find_k(frequency=1/1550,
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|
|
tolerance=(1/1550 - 1/1551),
|
2017-12-17 21:32:59 -08:00
|
|
|
direction=[1, 0, 0],
|
2017-12-09 18:21:37 -08:00
|
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|
G_matrix=recip_lattice,
|
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|
|
epsilon=epsilon,
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|
band=0)
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|
|
|
|
'''
|
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|
|
2018-01-15 22:43:33 -08:00
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|
from typing import Tuple, Callable
|
2017-12-17 21:33:53 -08:00
|
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|
import logging
|
2017-12-09 18:21:37 -08:00
|
|
|
import numpy
|
2018-01-08 16:16:26 -08:00
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|
from numpy import pi, real, trace
|
2018-01-15 22:43:59 -08:00
|
|
|
from numpy.fft import fftfreq
|
2017-12-09 18:21:37 -08:00
|
|
|
import scipy
|
2017-12-17 21:33:53 -08:00
|
|
|
import scipy.optimize
|
2017-12-09 18:21:37 -08:00
|
|
|
from scipy.linalg import norm
|
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|
|
import scipy.sparse.linalg as spalg
|
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|
|
2019-11-27 22:59:52 -08:00
|
|
|
from ..fdmath import fdfield_t
|
2017-12-09 18:21:37 -08:00
|
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|
|
2017-12-17 21:33:53 -08:00
|
|
|
logger = logging.getLogger(__name__)
|
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|
|
|
2017-12-09 18:21:37 -08:00
|
|
|
|
2018-01-15 22:43:59 -08:00
|
|
|
try:
|
|
|
|
import pyfftw.interfaces.numpy_fft
|
|
|
|
import pyfftw.interfaces
|
|
|
|
import multiprocessing
|
2019-07-09 20:07:44 -07:00
|
|
|
logger.info('Using pyfftw')
|
2018-01-15 22:43:59 -08:00
|
|
|
|
|
|
|
pyfftw.interfaces.cache.enable()
|
|
|
|
pyfftw.interfaces.cache.set_keepalive_time(3600)
|
|
|
|
fftw_args = {
|
|
|
|
'threads': multiprocessing.cpu_count(),
|
|
|
|
'overwrite_input': True,
|
|
|
|
'planner_effort': 'FFTW_EXHAUSTIVE',
|
|
|
|
}
|
|
|
|
|
|
|
|
def fftn(*args, **kwargs):
|
|
|
|
return pyfftw.interfaces.numpy_fft.fftn(*args, **kwargs, **fftw_args)
|
|
|
|
|
|
|
|
def ifftn(*args, **kwargs):
|
|
|
|
return pyfftw.interfaces.numpy_fft.ifftn(*args, **kwargs, **fftw_args)
|
|
|
|
|
|
|
|
except ImportError:
|
|
|
|
from numpy.fft import fftn, ifftn
|
2019-07-09 20:07:44 -07:00
|
|
|
logger.info('Using numpy fft')
|
2018-01-15 22:43:59 -08:00
|
|
|
|
|
|
|
|
2017-12-09 18:21:37 -08:00
|
|
|
def generate_kmn(k0: numpy.ndarray,
|
|
|
|
G_matrix: numpy.ndarray,
|
|
|
|
shape: numpy.ndarray
|
|
|
|
) -> Tuple[numpy.ndarray, numpy.ndarray, numpy.ndarray]:
|
|
|
|
"""
|
|
|
|
Generate a (k, m, n) orthogonal basis for each k-vector in the simulation grid.
|
|
|
|
|
|
|
|
:param k0: [k0x, k0y, k0z], Bloch wavevector, in G basis.
|
|
|
|
:param G_matrix: 3x3 matrix, with reciprocal lattice vectors as columns.
|
|
|
|
:param shape: [nx, ny, nz] shape of the simulation grid.
|
|
|
|
:return: (|k|, m, n) where |k| has shape tuple(shape) + (1,)
|
|
|
|
and m, n have shape tuple(shape) + (3,).
|
|
|
|
All are given in the xyz basis (e.g. |k|[0,0,0] = norm(G_matrix @ k0)).
|
|
|
|
"""
|
|
|
|
k0 = numpy.array(k0)
|
|
|
|
|
|
|
|
Gi_grids = numpy.meshgrid(*(fftfreq(n, 1/n) for n in shape[:3]), indexing='ij')
|
|
|
|
Gi = numpy.stack(Gi_grids, axis=3)
|
|
|
|
|
|
|
|
k_G = k0[None, None, None, :] - Gi
|
|
|
|
k_xyz = numpy.rollaxis(G_matrix @ numpy.rollaxis(k_G, 3, 2), 3, 2)
|
|
|
|
|
|
|
|
m = numpy.broadcast_to([0, 1, 0], tuple(shape[:3]) + (3,)).astype(float)
|
|
|
|
n = numpy.broadcast_to([0, 0, 1], tuple(shape[:3]) + (3,)).astype(float)
|
|
|
|
|
|
|
|
xy_non0 = numpy.any(k_xyz[:, :, :, 0:1] != 0, axis=3)
|
|
|
|
if numpy.any(xy_non0):
|
|
|
|
u = numpy.cross(k_xyz[xy_non0], [0, 0, 1])
|
|
|
|
m[xy_non0, :] = u / norm(u, axis=1)[:, None]
|
|
|
|
|
|
|
|
z_non0 = numpy.any(k_xyz != 0, axis=3)
|
|
|
|
if numpy.any(z_non0):
|
|
|
|
v = numpy.cross(k_xyz[z_non0], m[z_non0])
|
|
|
|
n[z_non0, :] = v / norm(v, axis=1)[:, None]
|
|
|
|
|
|
|
|
k_mag = norm(k_xyz, axis=3)[:, :, :, None]
|
|
|
|
return k_mag, m, n
|
|
|
|
|
|
|
|
|
|
|
|
def maxwell_operator(k0: numpy.ndarray,
|
|
|
|
G_matrix: numpy.ndarray,
|
2019-11-27 22:59:52 -08:00
|
|
|
epsilon: fdfield_t,
|
|
|
|
mu: fdfield_t = None
|
2017-12-09 18:21:37 -08:00
|
|
|
) -> Callable[[numpy.ndarray], numpy.ndarray]:
|
|
|
|
"""
|
|
|
|
Generate the Maxwell operator
|
|
|
|
conv(1/mu_k, ik x conv(1/eps_k, ik x ___))
|
|
|
|
which is the spatial-frequency-space representation of
|
|
|
|
1/mu * curl(1/eps * curl(___))
|
|
|
|
|
|
|
|
The operator is a function that acts on a vector h_mn of size (2 * epsilon[0].size)
|
|
|
|
|
|
|
|
See the module-level docstring for more information.
|
|
|
|
|
|
|
|
:param k0: Bloch wavevector, [k0x, k0y, k0z].
|
|
|
|
:param G_matrix: 3x3 matrix, with reciprocal lattice vectors as columns.
|
|
|
|
:param epsilon: Dielectric constant distribution for the simulation.
|
|
|
|
All fields are sampled at cell centers (i.e., NOT Yee-gridded)
|
|
|
|
:param mu: Magnetic permability distribution for the simulation.
|
|
|
|
Default None (1 everywhere).
|
|
|
|
:return: Function which applies the maxwell operator to h_mn.
|
|
|
|
"""
|
|
|
|
|
|
|
|
shape = epsilon[0].shape + (1,)
|
|
|
|
k_mag, m, n = generate_kmn(k0, G_matrix, shape)
|
|
|
|
|
|
|
|
epsilon = numpy.stack(epsilon, 3)
|
|
|
|
if mu is not None:
|
|
|
|
mu = numpy.stack(mu, 3)
|
|
|
|
|
|
|
|
def operator(h: numpy.ndarray):
|
|
|
|
"""
|
|
|
|
Maxwell operator for Bloch eigenmode simulation.
|
|
|
|
|
|
|
|
h is complex 2-field in (m, n) basis, vectorized
|
|
|
|
|
|
|
|
:param h: Raveled h_mn; size (2 * epsilon[0].size).
|
|
|
|
:return: Raveled conv(1/mu_k, ik x conv(1/eps_k, ik x h_mn)).
|
|
|
|
"""
|
|
|
|
hin_m, hin_n = [hi.reshape(shape) for hi in numpy.split(h, 2)]
|
|
|
|
|
|
|
|
#{d,e,h}_xyz fields are complex 3-fields in (1/x, 1/y, 1/z) basis
|
|
|
|
|
|
|
|
# cross product and transform into xyz basis
|
|
|
|
d_xyz = (n * hin_m -
|
|
|
|
m * hin_n) * k_mag
|
|
|
|
|
|
|
|
# divide by epsilon
|
2017-12-17 21:32:29 -08:00
|
|
|
e_xyz = fftn(ifftn(d_xyz, axes=range(3)) / epsilon, axes=range(3))
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
# cross product and transform into mn basis
|
|
|
|
b_m = numpy.sum(e_xyz * n, axis=3)[:, :, :, None] * -k_mag
|
|
|
|
b_n = numpy.sum(e_xyz * m, axis=3)[:, :, :, None] * +k_mag
|
|
|
|
|
|
|
|
if mu is None:
|
|
|
|
h_m, h_n = b_m, b_n
|
|
|
|
else:
|
|
|
|
# transform from mn to xyz
|
|
|
|
b_xyz = (m * b_m[:, :, :, None] +
|
|
|
|
n * b_n[:, :, :, None])
|
|
|
|
|
|
|
|
# divide by mu
|
2017-12-17 21:32:29 -08:00
|
|
|
h_xyz = fftn(ifftn(b_xyz, axes=range(3)) / mu, axes=range(3))
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
# transform back to mn
|
|
|
|
h_m = numpy.sum(h_xyz * m, axis=3)
|
|
|
|
h_n = numpy.sum(h_xyz * n, axis=3)
|
|
|
|
return numpy.hstack((h_m.ravel(), h_n.ravel()))
|
|
|
|
|
|
|
|
return operator
|
|
|
|
|
|
|
|
|
|
|
|
def hmn_2_exyz(k0: numpy.ndarray,
|
|
|
|
G_matrix: numpy.ndarray,
|
2019-11-27 22:59:52 -08:00
|
|
|
epsilon: fdfield_t,
|
|
|
|
) -> Callable[[numpy.ndarray], fdfield_t]:
|
2017-12-09 18:21:37 -08:00
|
|
|
"""
|
|
|
|
Generate an operator which converts a vectorized spatial-frequency-space
|
|
|
|
h_mn into an E-field distribution, i.e.
|
|
|
|
ifft(conv(1/eps_k, ik x h_mn))
|
|
|
|
|
|
|
|
The operator is a function that acts on a vector h_mn of size (2 * epsilon[0].size)
|
|
|
|
|
|
|
|
See the module-level docstring for more information.
|
|
|
|
|
|
|
|
:param k0: Bloch wavevector, [k0x, k0y, k0z].
|
|
|
|
:param G_matrix: 3x3 matrix, with reciprocal lattice vectors as columns.
|
|
|
|
:param epsilon: Dielectric constant distribution for the simulation.
|
|
|
|
All fields are sampled at cell centers (i.e., NOT Yee-gridded)
|
|
|
|
:return: Function for converting h_mn into E_xyz
|
|
|
|
"""
|
|
|
|
shape = epsilon[0].shape + (1,)
|
|
|
|
epsilon = numpy.stack(epsilon, 3)
|
|
|
|
|
|
|
|
k_mag, m, n = generate_kmn(k0, G_matrix, shape)
|
|
|
|
|
2019-11-27 22:59:52 -08:00
|
|
|
def operator(h: numpy.ndarray) -> fdfield_t:
|
2017-12-09 18:21:37 -08:00
|
|
|
hin_m, hin_n = [hi.reshape(shape) for hi in numpy.split(h, 2)]
|
|
|
|
d_xyz = (n * hin_m -
|
|
|
|
m * hin_n) * k_mag
|
|
|
|
|
|
|
|
# divide by epsilon
|
2017-12-17 21:32:29 -08:00
|
|
|
return [ei for ei in numpy.rollaxis(ifftn(d_xyz, axes=range(3)) / epsilon, 3)]
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
return operator
|
|
|
|
|
|
|
|
|
|
|
|
def hmn_2_hxyz(k0: numpy.ndarray,
|
|
|
|
G_matrix: numpy.ndarray,
|
2019-11-27 22:59:52 -08:00
|
|
|
epsilon: fdfield_t
|
|
|
|
) -> Callable[[numpy.ndarray], fdfield_t]:
|
2017-12-09 18:21:37 -08:00
|
|
|
"""
|
|
|
|
Generate an operator which converts a vectorized spatial-frequency-space
|
|
|
|
h_mn into an H-field distribution, i.e.
|
|
|
|
ifft(h_mn)
|
|
|
|
|
|
|
|
The operator is a function that acts on a vector h_mn of size (2 * epsilon[0].size)
|
|
|
|
|
|
|
|
See the module-level docstring for more information.
|
|
|
|
|
|
|
|
:param k0: Bloch wavevector, [k0x, k0y, k0z].
|
|
|
|
:param G_matrix: 3x3 matrix, with reciprocal lattice vectors as columns.
|
|
|
|
:param epsilon: Dielectric constant distribution for the simulation.
|
|
|
|
Only epsilon[0].shape is used.
|
|
|
|
:return: Function for converting h_mn into H_xyz
|
|
|
|
"""
|
|
|
|
shape = epsilon[0].shape + (1,)
|
2018-01-15 22:43:33 -08:00
|
|
|
_k_mag, m, n = generate_kmn(k0, G_matrix, shape)
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
def operator(h: numpy.ndarray):
|
|
|
|
hin_m, hin_n = [hi.reshape(shape) for hi in numpy.split(h, 2)]
|
|
|
|
h_xyz = (m * hin_m +
|
|
|
|
n * hin_n)
|
2017-12-17 21:32:29 -08:00
|
|
|
return [ifftn(hi) for hi in numpy.rollaxis(h_xyz, 3)]
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
return operator
|
|
|
|
|
|
|
|
|
|
|
|
def inverse_maxwell_operator_approx(k0: numpy.ndarray,
|
|
|
|
G_matrix: numpy.ndarray,
|
2019-11-27 22:59:52 -08:00
|
|
|
epsilon: fdfield_t,
|
|
|
|
mu: fdfield_t = None
|
2017-12-09 18:21:37 -08:00
|
|
|
) -> Callable[[numpy.ndarray], numpy.ndarray]:
|
|
|
|
"""
|
|
|
|
Generate an approximate inverse of the Maxwell operator,
|
|
|
|
ik x conv(eps_k, ik x conv(mu_k, ___))
|
|
|
|
which can be used to improve the speed of ARPACK in shift-invert mode.
|
|
|
|
|
|
|
|
See the module-level docstring for more information.
|
|
|
|
|
|
|
|
:param k0: Bloch wavevector, [k0x, k0y, k0z].
|
|
|
|
:param G_matrix: 3x3 matrix, with reciprocal lattice vectors as columns.
|
|
|
|
:param epsilon: Dielectric constant distribution for the simulation.
|
|
|
|
All fields are sampled at cell centers (i.e., NOT Yee-gridded)
|
|
|
|
:param mu: Magnetic permability distribution for the simulation.
|
|
|
|
Default None (1 everywhere).
|
|
|
|
:return: Function which applies the approximate inverse of the maxwell operator to h_mn.
|
|
|
|
"""
|
|
|
|
shape = epsilon[0].shape + (1,)
|
|
|
|
epsilon = numpy.stack(epsilon, 3)
|
|
|
|
|
|
|
|
k_mag, m, n = generate_kmn(k0, G_matrix, shape)
|
|
|
|
|
|
|
|
if mu is not None:
|
|
|
|
mu = numpy.stack(mu, 3)
|
|
|
|
|
|
|
|
def operator(h: numpy.ndarray):
|
|
|
|
"""
|
|
|
|
Approximate inverse Maxwell operator for Bloch eigenmode simulation.
|
|
|
|
|
|
|
|
h is complex 2-field in (m, n) basis, vectorized
|
|
|
|
|
|
|
|
:param h: Raveled h_mn; size (2 * epsilon[0].size).
|
|
|
|
:return: Raveled ik x conv(eps_k, ik x conv(mu_k, h_mn))
|
|
|
|
"""
|
|
|
|
hin_m, hin_n = [hi.reshape(shape) for hi in numpy.split(h, 2)]
|
|
|
|
|
|
|
|
#{d,e,h}_xyz fields are complex 3-fields in (1/x, 1/y, 1/z) basis
|
|
|
|
|
|
|
|
if mu is None:
|
|
|
|
b_m, b_n = hin_m, hin_n
|
|
|
|
else:
|
|
|
|
# transform from mn to xyz
|
|
|
|
h_xyz = (m * hin_m[:, :, :, None] +
|
|
|
|
n * hin_n[:, :, :, None])
|
|
|
|
|
|
|
|
# multiply by mu
|
2017-12-17 21:32:29 -08:00
|
|
|
b_xyz = fftn(ifftn(h_xyz, axes=range(3)) * mu, axes=range(3))
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
# transform back to mn
|
|
|
|
b_m = numpy.sum(b_xyz * m, axis=3)
|
|
|
|
b_n = numpy.sum(b_xyz * n, axis=3)
|
|
|
|
|
|
|
|
# cross product and transform into xyz basis
|
|
|
|
e_xyz = (n * b_m -
|
|
|
|
m * b_n) / k_mag
|
|
|
|
|
|
|
|
# multiply by epsilon
|
2017-12-17 21:32:29 -08:00
|
|
|
d_xyz = fftn(ifftn(e_xyz, axes=range(3)) * epsilon, axes=range(3))
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
# cross product and transform into mn basis crossinv_t2c
|
2018-01-15 22:44:14 -08:00
|
|
|
h_m = numpy.sum(d_xyz * n, axis=3)[:, :, :, None] / +k_mag
|
|
|
|
h_n = numpy.sum(d_xyz * m, axis=3)[:, :, :, None] / -k_mag
|
2017-12-09 18:21:37 -08:00
|
|
|
|
|
|
|
return numpy.hstack((h_m.ravel(), h_n.ravel()))
|
|
|
|
|
|
|
|
return operator
|
|
|
|
|
|
|
|
|
2018-01-08 16:16:26 -08:00
|
|
|
def find_k(frequency: float,
|
|
|
|
tolerance: float,
|
|
|
|
direction: numpy.ndarray,
|
|
|
|
G_matrix: numpy.ndarray,
|
2019-11-27 22:59:52 -08:00
|
|
|
epsilon: fdfield_t,
|
|
|
|
mu: fdfield_t = None,
|
2018-01-08 16:16:26 -08:00
|
|
|
band: int = 0,
|
|
|
|
k_min: float = 0,
|
|
|
|
k_max: float = 0.5,
|
2019-07-09 20:07:13 -07:00
|
|
|
solve_callback: Callable = None
|
2018-01-08 16:16:26 -08:00
|
|
|
) -> Tuple[numpy.ndarray, float]:
|
|
|
|
"""
|
|
|
|
Search for a bloch vector that has a given frequency.
|
|
|
|
|
|
|
|
:param frequency: Target frequency.
|
|
|
|
:param tolerance: Target frequency tolerance.
|
|
|
|
:param direction: k-vector direction to search along.
|
|
|
|
:param G_matrix: 3x3 matrix, with reciprocal lattice vectors as columns.
|
|
|
|
:param epsilon: Dielectric constant distribution for the simulation.
|
|
|
|
All fields are sampled at cell centers (i.e., NOT Yee-gridded)
|
|
|
|
:param mu: Magnetic permability distribution for the simulation.
|
|
|
|
Default None (1 everywhere).
|
|
|
|
:param band: Which band to search in. Default 0 (lowest frequency).
|
|
|
|
return: (k, actual_frequency) The found k-vector and its frequency
|
|
|
|
"""
|
|
|
|
|
|
|
|
direction = numpy.array(direction) / norm(direction)
|
|
|
|
|
|
|
|
def get_f(k0_mag: float, band: int = 0):
|
|
|
|
k0 = direction * k0_mag
|
2019-07-09 20:07:13 -07:00
|
|
|
n, v = eigsolve(band + 1, k0, G_matrix=G_matrix, epsilon=epsilon, mu=mu)
|
2018-01-08 16:16:26 -08:00
|
|
|
f = numpy.sqrt(numpy.abs(numpy.real(n[band])))
|
2019-07-09 20:07:13 -07:00
|
|
|
if solve_callback:
|
|
|
|
solve_callback(k0_mag, n, v, f)
|
2018-01-08 16:16:26 -08:00
|
|
|
return f
|
|
|
|
|
|
|
|
res = scipy.optimize.minimize_scalar(lambda x: abs(get_f(x, band) - frequency),
|
|
|
|
(k_min + k_max) / 2,
|
|
|
|
method='Bounded',
|
|
|
|
bounds=(k_min, k_max),
|
|
|
|
options={'xatol': abs(tolerance)})
|
|
|
|
return res.x * direction, res.fun + frequency
|
|
|
|
|
|
|
|
|
2017-12-09 18:21:37 -08:00
|
|
|
def eigsolve(num_modes: int,
|
|
|
|
k0: numpy.ndarray,
|
|
|
|
G_matrix: numpy.ndarray,
|
2019-11-27 22:59:52 -08:00
|
|
|
epsilon: fdfield_t,
|
|
|
|
mu: fdfield_t = None,
|
2018-01-08 23:33:22 -08:00
|
|
|
tolerance: float = 1e-20,
|
|
|
|
max_iters: int = 10000,
|
|
|
|
reset_iters: int = 100,
|
2017-12-09 18:21:37 -08:00
|
|
|
) -> Tuple[numpy.ndarray, numpy.ndarray]:
|
|
|
|
"""
|
|
|
|
Find the first (lowest-frequency) num_modes eigenmodes with Bloch wavevector
|
|
|
|
k0 of the specified structure.
|
|
|
|
|
|
|
|
:param k0: Bloch wavevector, [k0x, k0y, k0z].
|
|
|
|
:param G_matrix: 3x3 matrix, with reciprocal lattice vectors as columns.
|
|
|
|
:param epsilon: Dielectric constant distribution for the simulation.
|
|
|
|
All fields are sampled at cell centers (i.e., NOT Yee-gridded)
|
|
|
|
:param mu: Magnetic permability distribution for the simulation.
|
|
|
|
Default None (1 everywhere).
|
2018-01-08 16:16:26 -08:00
|
|
|
:param tolerance: Solver stops when fractional change in the objective
|
|
|
|
trace(Z.H @ A @ Z @ inv(Z Z.H)) is smaller than the tolerance
|
2017-12-09 18:21:37 -08:00
|
|
|
:return: (eigenvalues, eigenvectors) where eigenvalues[i] corresponds to the
|
|
|
|
vector eigenvectors[i, :]
|
|
|
|
"""
|
|
|
|
h_size = 2 * epsilon[0].size
|
|
|
|
|
2017-12-21 20:11:30 -08:00
|
|
|
kmag = norm(G_matrix @ k0)
|
|
|
|
|
2017-12-17 21:33:53 -08:00
|
|
|
'''
|
|
|
|
Generate the operators
|
|
|
|
'''
|
2017-12-09 18:21:37 -08:00
|
|
|
mop = maxwell_operator(k0=k0, G_matrix=G_matrix, epsilon=epsilon, mu=mu)
|
|
|
|
imop = inverse_maxwell_operator_approx(k0=k0, G_matrix=G_matrix, epsilon=epsilon, mu=mu)
|
|
|
|
|
|
|
|
scipy_op = spalg.LinearOperator(dtype=complex, shape=(h_size, h_size), matvec=mop)
|
|
|
|
scipy_iop = spalg.LinearOperator(dtype=complex, shape=(h_size, h_size), matvec=imop)
|
|
|
|
|
2017-12-17 21:33:53 -08:00
|
|
|
y_shape = (h_size, num_modes)
|
|
|
|
|
2018-01-08 16:16:26 -08:00
|
|
|
prev_E = 0
|
|
|
|
d_scale = 1
|
|
|
|
prev_traceGtKG = 0
|
2018-01-09 00:00:58 -08:00
|
|
|
#prev_theta = 0.5
|
2018-01-08 16:16:26 -08:00
|
|
|
D = numpy.zeros(shape=y_shape, dtype=complex)
|
|
|
|
|
|
|
|
y0 = None
|
|
|
|
if y0 is None:
|
2018-01-09 00:00:58 -08:00
|
|
|
Z = numpy.random.rand(*y_shape) + 1j * numpy.random.rand(*y_shape)
|
2018-01-08 16:16:26 -08:00
|
|
|
else:
|
|
|
|
Z = y0
|
|
|
|
|
|
|
|
while True:
|
2018-01-15 22:43:33 -08:00
|
|
|
Z *= num_modes / norm(Z)
|
2018-01-09 00:00:58 -08:00
|
|
|
ZtZ = Z.conj().T @ Z
|
2018-01-08 16:16:26 -08:00
|
|
|
try:
|
2018-01-09 00:00:58 -08:00
|
|
|
U = numpy.linalg.inv(ZtZ)
|
2018-01-08 16:16:26 -08:00
|
|
|
except numpy.linalg.LinAlgError:
|
2018-01-09 00:00:58 -08:00
|
|
|
Z = numpy.random.rand(*y_shape) + 1j * numpy.random.rand(*y_shape)
|
2018-01-08 16:16:26 -08:00
|
|
|
continue
|
|
|
|
|
|
|
|
trace_U = real(trace(U))
|
|
|
|
if trace_U > 1e8 * num_modes:
|
|
|
|
Z = Z @ scipy.linalg.sqrtm(U).conj().T
|
|
|
|
prev_traceGtKG = 0
|
|
|
|
continue
|
|
|
|
break
|
|
|
|
|
2018-01-15 22:43:33 -08:00
|
|
|
for i in range(max_iters):
|
2018-01-08 23:28:57 -08:00
|
|
|
ZtZ = Z.conj().T @ Z
|
|
|
|
U = numpy.linalg.inv(ZtZ)
|
2018-01-08 16:16:26 -08:00
|
|
|
AZ = scipy_op @ Z
|
|
|
|
AZU = AZ @ U
|
|
|
|
ZtAZU = Z.conj().T @ AZU
|
2018-01-08 23:33:22 -08:00
|
|
|
E_signed = real(trace(ZtAZU))
|
|
|
|
sgn = numpy.sign(E_signed)
|
|
|
|
E = numpy.abs(E_signed)
|
2018-01-08 16:16:26 -08:00
|
|
|
G = (AZU - Z @ U @ ZtAZU) * sgn
|
|
|
|
|
2018-01-15 22:43:33 -08:00
|
|
|
if i > 0 and abs(E - prev_E) < tolerance * 0.5 * (E + prev_E + 1e-7):
|
2019-07-09 20:07:44 -07:00
|
|
|
logger.info('Optimization succeded: {} - 5e-8 < {} * {} / 2'.format(abs(E - prev_E), tolerance, E + prev_E))
|
2017-12-27 01:44:45 -08:00
|
|
|
break
|
2017-12-21 20:11:30 -08:00
|
|
|
|
2018-01-08 16:16:26 -08:00
|
|
|
KG = scipy_iop @ G
|
2018-01-08 23:28:57 -08:00
|
|
|
traceGtKG = _rtrace_AtB(G, KG)
|
2017-12-17 21:33:53 -08:00
|
|
|
|
2018-01-15 22:43:33 -08:00
|
|
|
if prev_traceGtKG == 0 or i % reset_iters == 0:
|
2018-01-08 23:33:22 -08:00
|
|
|
logger.info('CG reset')
|
2018-01-08 16:16:26 -08:00
|
|
|
gamma = 0
|
|
|
|
else:
|
2018-01-08 23:28:57 -08:00
|
|
|
gamma = traceGtKG / prev_traceGtKG
|
2018-01-08 16:16:26 -08:00
|
|
|
|
2018-01-15 22:43:33 -08:00
|
|
|
D = gamma / d_scale * D + KG
|
|
|
|
d_scale = num_modes / norm(D)
|
|
|
|
D *= d_scale
|
2018-01-08 16:16:26 -08:00
|
|
|
|
2018-01-08 23:28:57 -08:00
|
|
|
ZtAZ = Z.conj().T @ AZ
|
|
|
|
|
2018-01-08 16:16:26 -08:00
|
|
|
AD = scipy_op @ D
|
|
|
|
DtD = D.conj().T @ D
|
|
|
|
DtAD = D.conj().T @ AD
|
|
|
|
|
2018-01-08 23:28:57 -08:00
|
|
|
symZtD = _symmetrize(Z.conj().T @ D)
|
|
|
|
symZtAD = _symmetrize(Z.conj().T @ AD)
|
2018-01-08 16:16:26 -08:00
|
|
|
|
2018-01-15 22:44:59 -08:00
|
|
|
Qi_memo = [None, None]
|
|
|
|
def Qi_func(theta):
|
|
|
|
nonlocal Qi_memo
|
|
|
|
if Qi_memo[0] == theta:
|
|
|
|
return Qi_memo[1]
|
2018-01-08 16:16:26 -08:00
|
|
|
|
|
|
|
c = numpy.cos(theta)
|
|
|
|
s = numpy.sin(theta)
|
|
|
|
Q = c*c * ZtZ + s*s * DtD + 2*s*c * symZtD
|
|
|
|
try:
|
|
|
|
Qi = numpy.linalg.inv(Q)
|
|
|
|
except numpy.linalg.LinAlgError:
|
|
|
|
logger.info('taylor Qi')
|
|
|
|
# if c or s small, taylor expand
|
|
|
|
if c < 1e-4 * s and c != 0:
|
2018-01-15 22:44:59 -08:00
|
|
|
DtDi = numpy.linalg.inv(DtD)
|
|
|
|
Qi = DtDi / (s*s) - 2*c/(s*s*s) * (DtDi @ (DtDi @ symZtD).conj().T)
|
2018-01-08 16:16:26 -08:00
|
|
|
elif s < 1e-4 * c and s != 0:
|
2018-01-15 22:44:59 -08:00
|
|
|
ZtZi = numpy.linalg.inv(ZtZ)
|
|
|
|
Qi = ZtZi / (c*c) - 2*s/(c*c*c) * (ZtZi @ (ZtZi @ symZtD).conj().T)
|
2018-01-08 16:16:26 -08:00
|
|
|
else:
|
|
|
|
raise Exception('Inexplicable singularity in trace_func')
|
2018-01-15 22:44:59 -08:00
|
|
|
Qi_memo[0] = theta
|
|
|
|
Qi_memo[1] = Qi
|
2018-01-08 16:16:26 -08:00
|
|
|
return Qi
|
|
|
|
|
|
|
|
def trace_func(theta):
|
|
|
|
c = numpy.cos(theta)
|
|
|
|
s = numpy.sin(theta)
|
|
|
|
Qi = Qi_func(theta)
|
|
|
|
R = c*c * ZtAZ + s*s * DtAD + 2*s*c * symZtAD
|
2018-01-08 23:28:57 -08:00
|
|
|
trace = _rtrace_AtB(R, Qi)
|
2018-01-08 16:16:26 -08:00
|
|
|
return numpy.abs(trace)
|
|
|
|
|
2018-01-08 23:28:57 -08:00
|
|
|
'''
|
|
|
|
def trace_deriv(theta):
|
|
|
|
Qi = Qi_func(theta)
|
|
|
|
c2 = numpy.cos(2 * theta)
|
|
|
|
s2 = numpy.sin(2 * theta)
|
|
|
|
F = -0.5*s2 * (ZtAZ - DtAD) + c2 * symZtAD
|
|
|
|
trace_deriv = _rtrace_AtB(Qi, F)
|
2018-01-08 16:16:26 -08:00
|
|
|
|
2018-01-08 23:28:57 -08:00
|
|
|
G = Qi @ F.conj().T @ Qi.conj().T
|
|
|
|
H = -0.5*s2 * (ZtZ - DtD) + c2 * symZtD
|
|
|
|
trace_deriv -= _rtrace_AtB(G, H)
|
2018-01-08 16:16:26 -08:00
|
|
|
|
2018-01-08 23:28:57 -08:00
|
|
|
trace_deriv *= 2
|
|
|
|
return trace_deriv * sgn
|
2018-01-08 16:16:26 -08:00
|
|
|
|
2018-01-15 22:43:33 -08:00
|
|
|
U_sZtD = U @ symZtD
|
|
|
|
|
|
|
|
dE = 2.0 * (_rtrace_AtB(U, symZtAD) -
|
|
|
|
_rtrace_AtB(ZtAZU, U_sZtD))
|
|
|
|
|
|
|
|
d2E = 2 * (_rtrace_AtB(U, DtAD) -
|
|
|
|
_rtrace_AtB(ZtAZU, U @ (DtD - 4 * symZtD @ U_sZtD)) -
|
|
|
|
4 * _rtrace_AtB(U, symZtAD @ U_sZtD))
|
|
|
|
|
|
|
|
# Newton-Raphson to find a root of the first derivative:
|
|
|
|
theta = -dE/d2E
|
|
|
|
|
|
|
|
if d2E < 0 or abs(theta) >= pi:
|
|
|
|
theta = -abs(prev_theta) * numpy.sign(dE)
|
|
|
|
|
|
|
|
# theta, new_E, new_dE = linmin(theta, E, dE, 0.1, min(tolerance, 1e-6), 1e-14, 0, -numpy.sign(dE) * K_PI, trace_func)
|
|
|
|
theta, n, _, new_E, _, _new_dE = scipy.optimize.line_search(trace_func, trace_deriv, xk=theta, pk=numpy.ones((1,1)), gfk=dE, old_fval=E, c1=min(tolerance, 1e-6), c2=0.1, amax=pi)
|
2018-01-08 16:16:26 -08:00
|
|
|
'''
|
|
|
|
result = scipy.optimize.minimize_scalar(trace_func, bounds=(0, pi), tol=tolerance)
|
|
|
|
new_E = result.fun
|
|
|
|
theta = result.x
|
|
|
|
|
|
|
|
improvement = numpy.abs(E - new_E) * 2 / numpy.abs(E + new_E)
|
|
|
|
logger.info('linmin improvement {}'.format(improvement))
|
|
|
|
Z *= numpy.cos(theta)
|
|
|
|
Z += D * numpy.sin(theta)
|
|
|
|
|
|
|
|
prev_traceGtKG = traceGtKG
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2018-01-09 00:00:58 -08:00
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#prev_theta = theta
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2018-01-08 16:16:26 -08:00
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prev_E = E
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2017-12-17 21:33:53 -08:00
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'''
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Recover eigenvectors from Z
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'''
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2018-01-08 16:16:26 -08:00
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U = numpy.linalg.inv(Z.conj().T @ Z)
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Y = Z @ scipy.linalg.sqrtm(U)
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W = Y.conj().T @ (scipy_op @ Y)
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2017-12-17 21:33:53 -08:00
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2018-01-08 16:16:26 -08:00
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eigvals, W_eigvecs = numpy.linalg.eig(W)
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eigvecs = Y @ W_eigvecs
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2017-12-17 21:33:53 -08:00
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for i in range(len(eigvals)):
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v = eigvecs[:, i]
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n = eigvals[i]
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v /= norm(v)
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2017-12-21 20:11:30 -08:00
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eigness = norm(scipy_op @ v - (v.conj() @ (scipy_op @ v)) * v )
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f = numpy.sqrt(-numpy.real(n))
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df = numpy.sqrt(-numpy.real(n + eigness))
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neff_err = kmag * (1/df - 1/f)
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logger.info('eigness {}: {}\n neff_err: {}'.format(i, eigness, neff_err))
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2017-12-17 21:33:53 -08:00
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order = numpy.argsort(numpy.abs(eigvals))
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2017-12-09 18:21:37 -08:00
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return eigvals[order], eigvecs.T[order]
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2018-01-15 22:43:33 -08:00
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'''
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def linmin(x_guess, f0, df0, x_max, f_tol=0.1, df_tol=min(tolerance, 1e-6), x_tol=1e-14, x_min=0, linmin_func):
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if df0 > 0:
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x0, f0, df0 = linmin(-x_guess, f0, -df0, -x_max, f_tol, df_tol, x_tol, -x_min, lambda q, dq: -linmin_func(q, dq))
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return -x0, f0, -df0
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elif df0 == 0:
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return 0, f0, df0
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else:
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x = x_guess
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fx = f0
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dfx = df0
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isave = numpy.zeros((2,), numpy.intc)
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dsave = numpy.zeros((13,), float)
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x, fx, dfx, task = minpack2.dsrch(x, fx, dfx, f_tol, df_tol, x_tol, task,
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x_min, x_max, isave, dsave)
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for i in range(int(1e6)):
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if task != 'F':
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logging.info('search converged in {} iterations'.format(i))
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break
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fx = f(x, dfx)
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x, fx, dfx, task = minpack2.dsrch(x, fx, dfx, f_tol, df_tol, x_tol, task,
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x_min, x_max, isave, dsave)
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return x, fx, dfx
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'''
|
2018-01-08 23:28:57 -08:00
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def _rtrace_AtB(A, B):
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|
|
return real(numpy.sum(A.conj() * B))
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def _symmetrize(A):
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|
|
return (A + A.conj().T) * 0.5
|
2017-12-09 18:21:37 -08:00
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