Revert "Add restrict keyword to pointers (not sharing the same memory for multiple fields)"

This reverts commit 60b70bb332d29fb5a2aecb801517be659cf4daf9.

It appears to have minimal performance impact, and fails to compile on
nvidia cards.

opencl_fdtd/kernels/update_h.cl

@@ -6,13 +6,14 @@
  *   common_header: Rendered contents of common.cl
  *   pmls: [{'axis': 'x', 'polarity': 'n', 'thickness': 8}, ...] list of pml dicts containing
  *      axes, polarities, and thicknesses.
- *   do_poynting: Whether to precalculate poynting vector components (boolean)
+ *   do_poynting: Whether to calculate poynting vector (boolean)
+ *   do_poynting_halves: Whether to calculate half-step poynting vectors (boolean)
  *   uniform_dx: If grid is uniform, uniform_dx should be the grid spacing.
  *      Otherwise, uniform_dx should be False and [inv_de{xyz}] arrays must be supplied as
  *      OpenCL args.
  *
  *  OpenCL args:
- *   E, H, dt, [inv_de{xyz}], [p{xyz}{01}h{np}, Psi_{xyz}{np}_H], [oS]
+ *   E, H, dt, [inv_de{xyz}], [p{xyz}{01}h{np}, Psi_{xyz}{np}_H], [S], [S0, S1]
  */
 
 {{common_header}}
@@ -52,24 +53,7 @@ if ({{r}} == s{{r}} - 1) {
     dE{{u ~ r}} = bloch_re * dE{{u ~ r}} + bloch_im * (F{{u}}[i + p{{u}}] - F{{u}}[i]);
     dE{{v ~ r}} = bloch_re * dE{{v ~ r}} + bloch_im * (F{{v}}[i + p{{v}}] - F{{v}}[i]);
 }
-{% endfor -%}
-
-{%- if do_poynting %}
-
-
-/*
- *  Precalculate averaged E
- */
-ftype aExy = Ex[i + py] + Ex[i];
-ftype aExz = Ex[i + pz] + Ex[i];
-
-ftype aEyx = Ey[i + px] + Ey[i];
-ftype aEyz = Ey[i + pz] + Ey[i];
-
-ftype aEzx = Ez[i + px] + Ez[i];
-ftype aEzy = Ez[i + py] + Ez[i];
-{%- endif %}
-
+{%- endfor %}
 
 
 
@@ -118,7 +102,7 @@ if ( s{{r}} > {{r}} && {{r}} >= s{{r}} - pml_{{r ~ p}}_thickness ) {
 /*
  *  Update H
  */
-{% if do_poynting -%}
+{% if do_poynting or do_poynting_halves -%}
 // Save old H for averaging
 ftype Hx_old = Hx[i];
 ftype Hy_old = Hy[i];
@@ -131,25 +115,40 @@ Hy[i] -= dt * (dExz - dEzx - pHyi);
 Hz[i] -= dt * (dEyx - dExy - pHzi);
 
 {% if do_poynting -%}
+/*
+ *  Calculate unscaled S components at ??? locations
+ *  //TODO: document S locations and types
+ */
+__global ftype *Sx = S + XX;
+__global ftype *Sy = S + YY;
+__global ftype *Sz = S + ZZ;
+
 // Average H across timesteps
 ftype aHxt = Hx[i] + Hx_old;
 ftype aHyt = Hy[i] + Hy_old;
 ftype aHzt = Hz[i] + Hz_old;
 
-/*
- *  Calculate unscaled S components at H locations
- */
-__global ftype *oSxy = oS + 0 * field_size;
-__global ftype *oSyz = oS + 1 * field_size;
-__global ftype *oSzx = oS + 2 * field_size;
-__global ftype *oSxz = oS + 3 * field_size;
-__global ftype *oSyx = oS + 4 * field_size;
-__global ftype *oSzy = oS + 5 * field_size;
-
-oSxy[i] = aEyx * aHzt;
-oSxz[i] = -aEzx * aHyt;
-oSyz[i] = aEzy * aHxt;
-oSyx[i] = -aExy * aHzt;
-oSzx[i] = aExz * aHyt;
-oSzy[i] = -aEyz * aHxt;
+Sx[i] = Ey[i + px] * aHzt - Ez[i + px] * aHyt;
+Sy[i] = Ez[i + py] * aHxt - Ex[i + py] * aHzt;
+Sz[i] = Ex[i + pz] * aHyt - Ey[i + pz] * aHxt;
+{%- endif -%}
+
+{% if do_poynting_halves -%}
+/*
+ *  Calculate unscaled S components at ??? locations
+ *  //TODO: document S locations and types
+ */
+__global ftype *Sx0 = S0 + XX;
+__global ftype *Sy0 = S0 + YY;
+__global ftype *Sz0 = S0 + ZZ;
+__global ftype *Sx1 = S1 + XX;
+__global ftype *Sy1 = S1 + YY;
+__global ftype *Sz1 = S1 + ZZ;
+
+Sx0[i] = Ey[i + px] * Hz_old - Ez[i + px] * Hy_old;
+Sy0[i] = Ez[i + py] * Hx_old - Ex[i + py] * Hz_old;
+Sz0[i] = Ex[i + pz] * Hy_old - Ey[i + pz] * Hx_old;
+Sx1[i] = Ey[i + px] * Hz[i] - Ez[i + px] * Hy[i];
+Sy1[i] = Ez[i + py] * Hx[i] - Ex[i + py] * Hz[i];
+Sz1[i] = Ex[i + pz] * Hy[i] - Ey[i + pz] * Hx[i];
 {%- endif -%}

opencl_fdtd/kernels/update_s.cl

@@ -1,36 +0,0 @@
-/*
- *  Update E-field, including any PMLs.
- *
- *  Template parameters:
- *   common_header: Rendered contents of common.cl
- *   pmls: [('x', 'n'), ('z', 'p'),...] list of pml axes and polarities
- *   pml_thickness: Number of cells (integer)
- *
- *  OpenCL args:
- *   E, H, dt, S, oS
- */
-
-{{common_header}}
-
-//////////////////////////////////////////////////////////////////////
-
-
-/*
- * Calculate S from oS (pre-calculated components)
- */
-__global ftype *Sx = S + XX;
-__global ftype *Sy = S + YY;
-__global ftype *Sz = S + ZZ;
-
-// Use unscaled S components from H locations
-__global ftype *oSxy = oS + 0 * field_size;
-__global ftype *oSyz = oS + 1 * field_size;
-__global ftype *oSzx = oS + 2 * field_size;
-__global ftype *oSxz = oS + 3 * field_size;
-__global ftype *oSyx = oS + 4 * field_size;
-__global ftype *oSzy = oS + 5 * field_size;
-
-ftype s_factor = dt * 0.125;
-Sx[i] = (oSxy[i] + oSxz[i] + oSxy[i + my] + oSxz[i + mz]) * s_factor;
-Sy[i] = (oSyz[i] + oSyx[i] + oSyz[i + mz] + oSyx[i + mx]) * s_factor;
-Sz[i] = (oSzx[i] + oSzy[i] + oSzx[i + mx] + oSzy[i + my]) * s_factor;

opencl_fdtd/simulation.py

@@ -26,7 +26,7 @@ class Simulation(object):
     """
     Constructs and holds the basic FDTD operations and related fields
 
-    After constructing this object, call the (update_E, update_H, update_S) members
+    After constructing this object, call the (update_E, update_H) members
      to perform FDTD updates on the stored (E, H, S) fields:
 
         pmls = [{'axis': a, 'polarity': p} for a in 'xyz' for p in 'np']
@@ -43,8 +43,6 @@ class Simulation(object):
             # Perturb the field (i.e., add a soft current source)
             sim.E[ind] += numpy.sin(omega * t * sim.dt)
             event = sim.update_H([])
-            if sim.update_S:
-                event = sim.update_S([event])
             event.wait()
 
             with lzma.open('saved_simulation', 'wb') as f:
@@ -112,6 +110,7 @@ class Simulation(object):
         :param float_type: numpy.float32 or numpy.float64. Default numpy.float32.
         :param do_poynting: If true, enables calculation of the poynting vector, S.
                 Poynting vector calculation adds the following computational burdens:
+                    ****INACCURATE, TODO FIXME*****
                     * During update_H, ~6 extra additions/cell are performed in order to spatially
                         average E and temporally average H. These quantities are multiplied
                         (6 multiplications/cell) and then stored (6 writes/cell, cache-friendly).
@@ -226,12 +225,7 @@ class Simulation(object):
 
         S_fields = OrderedDict()
         if do_poynting:
-            S_source = jinja_env.get_template('update_s.cl').render(**jinja_args)
-            self.sources['S'] = S_source
-
-            self.oS = pyopencl.array.zeros(self.queue, self.E.shape + (2,), dtype=self.arg_type)
             self.S = pyopencl.array.zeros_like(self.E)
-            S_fields[ptr('oS')] = self.oS
             S_fields[ptr('S')] = self.S
 
         J_fields = OrderedDict()
@@ -257,8 +251,6 @@ class Simulation(object):
         '''
         self.update_E = self._create_operation(E_source, (base_fields, eps_field, pml_e_fields))
         self.update_H = self._create_operation(H_source, (base_fields, pml_h_fields, S_fields))
-        if do_poynting:
-            self.update_S = self._create_operation(S_source, (base_fields, S_fields))
         if bloch_boundaries:
             self.update_F = self._create_operation(F_source, (bloch_fields, eps_field, pml_f_fields))
             self.update_G = self._create_operation(G_source, (bloch_fields, pml_g_fields))