from typing import List, Tuple import numpy import pytest PRNG = numpy.random.RandomState(12345) ##################################### # Test fixtures ##################################### @pytest.fixture(scope='module', params=[(5, 5, 1), (5, 1, 5), (5, 5, 5), #(7, 7, 7), ]) def shape(request): yield (3, *request.param) @pytest.fixture(scope='module', params=[1.0, 1.5]) def epsilon_bg(request): yield request.param @pytest.fixture(scope='module', params=[1.0, 2.5]) def epsilon_fg(request): yield request.param @pytest.fixture(scope='module', params=['center', '000', 'random']) def epsilon(request, shape, epsilon_bg, epsilon_fg): is3d = (numpy.array(shape) == 1).sum() == 0 if is3d: if request.param == '000': pytest.skip('Skipping 000 epsilon because test is 3D (for speed)') if epsilon_bg != 1: pytest.skip('Skipping epsilon_bg != 1 because test is 3D (for speed)') if epsilon_fg not in (1.0, 2.0): pytest.skip('Skipping epsilon_fg not in (1, 2) because test is 3D (for speed)') epsilon = numpy.full(shape, epsilon_bg, dtype=float) if request.param == 'center': epsilon[:, shape[1]//2, shape[2]//2, shape[3]//2] = epsilon_fg elif request.param == '000': epsilon[:, 0, 0, 0] = epsilon_fg elif request.param == 'random': epsilon[:] = PRNG.uniform(low=min(epsilon_bg, epsilon_fg), high=max(epsilon_bg, epsilon_fg), size=shape) yield epsilon @pytest.fixture(scope='module', params=[1.0])#, 1.5]) def j_mag(request): yield request.param @pytest.fixture(scope='module', params=['center', 'random']) def j_distribution(request, shape, j_mag): j = numpy.zeros(shape) if request.param == 'center': j[:, shape[1]//2, shape[2]//2, shape[3]//2] = j_mag elif request.param == '000': j[:, 0, 0, 0] = j_mag elif request.param == 'random': j[:] = PRNG.uniform(low=-j_mag, high=j_mag, size=shape) yield j @pytest.fixture(scope='module', params=[1.0, 1.5]) def dx(request): yield request.param @pytest.fixture(scope='module', params=['uniform']) def dxes(request, shape, dx): if request.param == 'uniform': dxes = [[numpy.full(s, dx) for s in shape[1:]] for _ in range(2)] yield dxes @pytest.fixture(scope='module', params=[(0, 4, 8), #(0,), ] ) def j_steps(request): yield request.param