Modify phase factor for 1-cell shift (poynting).
Also clarify some variable names
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@ -175,15 +175,17 @@ def _normalized_fields(e: numpy.ndarray,
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E = unvec(e, shape)
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H = unvec(h, shape)
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phase = numpy.exp(-1j * prop_phase / 2)
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S1 = E[0] * numpy.conj(H[1] * phase) * dxes_real[0][1] * dxes_real[1][0]
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S2 = E[1] * numpy.conj(H[0] * phase) * dxes_real[0][0] * dxes_real[1][1]
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P = numpy.real(S1.sum() - S2.sum())
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assert P > 0, 'Found a mode propagating in the wrong direction! P={}'.format(P)
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# Find time-averaged Sz and normalize to it
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# H phase is adjusted by a half-cell forward shift for Yee cell, and 1-cell reverse shift for Poynting
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phase = numpy.exp(-1j * -prop_phase / 2)
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Sz_a = E[0] * numpy.conj(H[1] * phase) * dxes_real[0][1] * dxes_real[1][0]
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Sz_b = E[1] * numpy.conj(H[0] * phase) * dxes_real[0][0] * dxes_real[1][1]
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Sz_tavg = numpy.real(Sz_a.sum() - Sz_b.sum()) * 0.5 # 0.5 since E, H are assumed to be peak (not RMS) amplitudes
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assert Sz_tavg > 0, 'Found a mode propagating in the wrong direction! Sz_tavg={}'.format(Sz_tavg)
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energy = epsilon * e.conj() * e
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norm_amplitude = 1 / numpy.sqrt(P)
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norm_amplitude = 1 / numpy.sqrt(Sz_tavg)
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norm_angle = -numpy.angle(e[energy.argmax()]) # Will randomly add a negative sign when mode is symmetric
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# Try to break symmetry to assign a consistent sign [experimental TODO]
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@ -488,5 +490,3 @@ def cylindrical_operator(omega: complex,
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return op
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