clean up old files

.idea/compiler.xml

@@ -2,43 +2,7 @@
 <project version="4">
   <component name="CompilerConfiguration">
     <excludeFromCompile>
-      <file url="file://$PROJECT_DIR$/src/circleArrayStim.java" />
+      <directory url="file://$PROJECT_DIR$/src/oldfiles" includeSubdirectories="true" />
-      <file url="file://$PROJECT_DIR$/src/objDensity.java" />
-      <file url="file://$PROJECT_DIR$/src/sketch.properties" />
-      <file url="file://$PROJECT_DIR$/src/protoGather.java" />
-      <file url="file://$PROJECT_DIR$/src/lineRotate.java" />
-      <file url="file://$PROJECT_DIR$/src/angleMove.java" />
-      <file url="file://$PROJECT_DIR$/src/heatup.java" />
-      <file url="file://$PROJECT_DIR$/src/angleGather.java" />
-      <file url="file://$PROJECT_DIR$/src/ObjectRecognition.java" />
-      <file url="file://$PROJECT_DIR$/src/colorScreen.java" />
-      <file url="file://$PROJECT_DIR$/src/RotateClass.java" />
-      <file url="file://$PROJECT_DIR$/src/squareCorridor.java" />
-      <file url="file://$PROJECT_DIR$/src/Presets.java" />
-      <file url="file://$PROJECT_DIR$/src/identifyEuglena.java" />
-      <file url="file://$PROJECT_DIR$/src/unidirectionStim.java" />
-      <file url="file://$PROJECT_DIR$/src/shrinkingCircle.java" />
-      <file url="file://$PROJECT_DIR$/src/euglena_basic_stimuli.java" />
-      <file url="file://$PROJECT_DIR$/src/protoClear.java" />
-      <file url="file://$PROJECT_DIR$/src/gradientWindow.java" />
-      <file url="file://$PROJECT_DIR$/src/recordTimelapse.java" />
-      <file url="file://$PROJECT_DIR$/src/ShrinkClass.java" />
-      <file url="file://$PROJECT_DIR$/src/TranslateClass.java" />
-      <file url="file://$PROJECT_DIR$/src/translateCircle.java" />
-      <file url="file://$PROJECT_DIR$/src/developer.java" />
-      <file url="file://$PROJECT_DIR$/src/shrinkingWindow.java" />
-      <file url="file://$PROJECT_DIR$/src/ExpandClass.java" />
-      <file url="file://$PROJECT_DIR$/src/rectangularStim.java" />
-      <file url="file://$PROJECT_DIR$/src/separate.java" />
-      <file url="file://$PROJECT_DIR$/src/testing.java" />
-      <file url="file://$PROJECT_DIR$/src/merge.java" />
-      <file url="file://$PROJECT_DIR$/src/window.java" />
-      <file url="file://$PROJECT_DIR$/src/snapshot.java" />
-      <file url="file://$PROJECT_DIR$/src/randomLED.java" />
-      <file url="file://$PROJECT_DIR$/src/proto488flashraster.java" />
-      <file url="file://$PROJECT_DIR$/src/clearDisplay.java" />
-      <file url="file://$PROJECT_DIR$/src/clearScreen.java" />
-      <file url="file://$PROJECT_DIR$/src/showCV.java" />
     </excludeFromCompile>
     <resourceExtensions />
     <wildcardResourcePatterns>

.idea/workspace.xml

@@ -2,14 +2,43 @@
 <project version="4">
   <component name="ChangeListManager">
     <list default="true" id="6e752a8c-6cb9-4ef9-9031-0329ce15fcb4" name="Default" comment="Ellipse can be drawn...">
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/EuglenaApplet.java" afterPath="$PROJECT_DIR$/src/EuglenaApplet.java" />
+      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/src/ProjectorCommandException.java" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/Expand.java" afterPath="$PROJECT_DIR$/src/Expand.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/ObjectRecognition.java" afterPath="$PROJECT_DIR$/src/oldfiles/ObjectRecognition.java" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/Menu.java" afterPath="$PROJECT_DIR$/src/Menu.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/Presets.java" afterPath="$PROJECT_DIR$/src/oldfiles/Presets.java" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/Rectangle.java" afterPath="$PROJECT_DIR$/src/Rectangle.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/angleGather.java" afterPath="$PROJECT_DIR$/src/oldfiles/angleGather.java" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/Rotate.java" afterPath="$PROJECT_DIR$/src/Rotate.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/angleMove.java" afterPath="$PROJECT_DIR$/src/oldfiles/angleMove.java" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/Shrink.java" afterPath="$PROJECT_DIR$/src/Shrink.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/circleArrayStim.java" afterPath="$PROJECT_DIR$/src/oldfiles/circleArrayStim.java" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/Translate.java" afterPath="$PROJECT_DIR$/src/Translate.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/clearScreen.java" afterPath="$PROJECT_DIR$/src/oldfiles/clearScreen.java" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/euglena_basic_stimuli.java" afterPath="$PROJECT_DIR$/src/euglena_basic_stimuli.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/colorScreen.java" afterPath="$PROJECT_DIR$/src/oldfiles/colorScreen.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/developer.java" afterPath="$PROJECT_DIR$/src/oldfiles/developer.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/euglena_basic_stimuli.java" afterPath="$PROJECT_DIR$/src/oldfiles/euglena_basic_stimuli.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/gradientWindow.java" afterPath="$PROJECT_DIR$/src/oldfiles/gradientWindow.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/heatup.java" afterPath="$PROJECT_DIR$/src/oldfiles/heatup.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/identifyEuglena.java" afterPath="$PROJECT_DIR$/src/oldfiles/identifyEuglena.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/lineRotate.java" afterPath="$PROJECT_DIR$/src/oldfiles/lineRotate.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/merge.java" afterPath="$PROJECT_DIR$/src/oldfiles/merge.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/objDensity.java" afterPath="$PROJECT_DIR$/src/oldfiles/objDensity.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/proto488flashraster.java" afterPath="$PROJECT_DIR$/src/oldfiles/proto488flashraster.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/protoClear.java" afterPath="$PROJECT_DIR$/src/oldfiles/protoClear.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/protoGather.java" afterPath="$PROJECT_DIR$/src/oldfiles/protoGather.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/randomLED.java" afterPath="$PROJECT_DIR$/src/oldfiles/randomLED.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/recordTimelapse.java" afterPath="$PROJECT_DIR$/src/oldfiles/recordTimelapse.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/rectangularStim.java" afterPath="$PROJECT_DIR$/src/oldfiles/rectangularStim.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/separate.java" afterPath="$PROJECT_DIR$/src/oldfiles/separate.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/showCV.java" afterPath="$PROJECT_DIR$/src/oldfiles/showCV.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/shrinkingCircle.java" afterPath="$PROJECT_DIR$/src/oldfiles/shrinkingCircle.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/shrinkingWindow.java" afterPath="$PROJECT_DIR$/src/oldfiles/shrinkingWindow.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/sketch.properties" afterPath="$PROJECT_DIR$/src/oldfiles/sketch.properties" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/snapshot.java" afterPath="$PROJECT_DIR$/src/oldfiles/snapshot.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/squareCorridor.java" afterPath="$PROJECT_DIR$/src/oldfiles/squareCorridor.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/testing.java" afterPath="$PROJECT_DIR$/src/oldfiles/testing.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/translateCircle.java" afterPath="$PROJECT_DIR$/src/oldfiles/translateCircle.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/unidirectionStim.java" afterPath="$PROJECT_DIR$/src/oldfiles/unidirectionStim.java" />
+      <change type="MOVED" beforePath="$PROJECT_DIR$/src/window.java" afterPath="$PROJECT_DIR$/src/oldfiles/window.java" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/compiler.xml" afterPath="$PROJECT_DIR$/.idea/compiler.xml" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/workspace.xml" afterPath="$PROJECT_DIR$/.idea/workspace.xml" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/ProjectorApplet.java" afterPath="$PROJECT_DIR$/src/ProjectorApplet.java" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/src/ProjectorCommand.java" afterPath="$PROJECT_DIR$/src/ProjectorCommand.java" />
     </list>
     <ignored path="processing-intellij.iws" />
     <ignored path=".idea/workspace.xml" />
@@ -31,10 +60,10 @@
         <state>
           <leaf SIDE_TABS_SIZE_LIMIT_KEY="300">
             <file leaf-file-name="euglena_basic_stimuli.java" pinned="false" current-in-tab="true">
-              <entry file="file://$PROJECT_DIR$/src/euglena_basic_stimuli.java">
+              <entry file="file://$PROJECT_DIR$/src/oldfiles/euglena_basic_stimuli.java">
                 <provider selected="true" editor-type-id="text-editor">
-                  <state relative-caret-position="-807">
+                  <state relative-caret-position="630">
-                    <caret line="33" column="49" selection-start-line="33" selection-start-column="49" selection-end-line="33" selection-end-column="49" />
+                    <caret line="35" column="0" selection-start-line="35" selection-start-column="0" selection-end-line="35" selection-end-column="0" />
                     <folding>
                       <element signature="imports" expanded="true" />
                     </folding>
@@ -56,26 +85,24 @@
       <file leaf-file-name="EuglenaApplet.java" pinned="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/src/EuglenaApplet.java">
           <provider selected="true" editor-type-id="text-editor">
-            <state relative-caret-position="226">
+            <state relative-caret-position="0">
-              <caret line="29" column="29" selection-start-line="29" selection-start-column="11" selection-end-line="29" selection-end-column="29" />
+              <caret line="0" column="30" selection-start-line="0" selection-start-column="30" selection-end-line="0" selection-end-column="30" />
-              <folding>
+              <folding />
-                <element signature="imports" expanded="true" />
-              </folding>
             </state>
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="ProjectorApplet.java" pinned="false" current-in-tab="false">
+      <file leaf-file-name="ProjectorApplet.java" pinned="false" current-in-tab="true">
         <entry file="file://$PROJECT_DIR$/src/ProjectorApplet.java">
           <provider selected="true" editor-type-id="text-editor">
-            <state relative-caret-position="378">
+            <state relative-caret-position="-26">
-              <caret line="21" column="0" selection-start-line="21" selection-start-column="0" selection-end-line="21" selection-end-column="0" />
+              <caret line="38" column="38" selection-start-line="38" selection-start-column="38" selection-end-line="38" selection-end-column="38" />
               <folding>
                 <element signature="imports" expanded="true" />
                 <element signature="e#545#546#0" expanded="true" />
                 <element signature="e#604#605#0" expanded="true" />
-                <element signature="e#1739#1740#0" expanded="true" />
+                <element signature="e#1744#1745#0" expanded="true" />
-                <element signature="e#1779#1780#0" expanded="true" />
+                <element signature="e#1784#1785#0" expanded="true" />
               </folding>
             </state>
           </provider>
@@ -84,8 +111,8 @@
       <file leaf-file-name="Menu.java" pinned="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/src/Menu.java">
           <provider selected="true" editor-type-id="text-editor">
-            <state relative-caret-position="856">
+            <state relative-caret-position="514">
-              <caret line="159" column="5" selection-start-line="159" selection-start-column="5" selection-end-line="159" selection-end-column="5" />
+              <caret line="221" column="23" selection-start-line="221" selection-start-column="23" selection-end-line="223" selection-end-column="89" />
               <folding>
                 <element signature="imports" expanded="true" />
               </folding>
@@ -93,6 +120,39 @@
           </provider>
         </entry>
       </file>
+      <file leaf-file-name="ProjectorCommand.java" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/src/ProjectorCommand.java">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="0">
+              <caret line="0" column="17" selection-start-line="0" selection-start-column="17" selection-end-line="0" selection-end-column="17" />
+              <folding />
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file leaf-file-name="ProjectorCommandException.java" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/src/ProjectorCommandException.java">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="72">
+              <caret line="4" column="1" selection-start-line="4" selection-start-column="1" selection-end-line="4" selection-end-column="1" />
+              <folding>
+                <element signature="e#98#99#0" expanded="true" />
+                <element signature="e#128#129#0" expanded="true" />
+              </folding>
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file leaf-file-name="testing.java" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/src/oldfiles/testing.java">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="198">
+              <caret line="11" column="0" selection-start-line="11" selection-start-column="0" selection-end-line="11" selection-end-column="0" />
+              <folding />
+            </state>
+          </provider>
+        </entry>
+      </file>
       <file leaf-file-name="Rotate.java" pinned="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/src/Rotate.java">
           <provider selected="true" editor-type-id="text-editor">
@@ -119,11 +179,11 @@
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="Translate.java" pinned="false" current-in-tab="true">
+      <file leaf-file-name="Translate.java" pinned="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/src/Translate.java">
           <provider selected="true" editor-type-id="text-editor">
-            <state relative-caret-position="-664">
+            <state relative-caret-position="-844">
-              <caret line="22" column="33" selection-start-line="22" selection-start-column="33" selection-end-line="22" selection-end-column="33" />
+              <caret line="14" column="37" selection-start-line="14" selection-start-column="37" selection-end-line="14" selection-end-column="37" />
               <folding>
                 <element signature="imports" expanded="true" />
               </folding>
@@ -183,9 +243,7 @@
         <option value="$PROJECT_DIR$/src/Line.java" />
         <option value="$PROJECT_DIR$/src/Ellipse.java" />
         <option value="$PROJECT_DIR$/src/Triangle.java" />
-        <option value="$PROJECT_DIR$/src/ProjectorCommand.java" />
         <option value="$PROJECT_DIR$/src/RotateClass.java" />
-        <option value="$PROJECT_DIR$/src/ProjectorApplet.java" />
         <option value="$PROJECT_DIR$/src/Rectangle.java" />
         <option value="$PROJECT_DIR$/src/EuglenaApplet.java" />
         <option value="$PROJECT_DIR$/src/Menu.java" />
@@ -194,6 +252,9 @@
         <option value="$PROJECT_DIR$/src/Translate.java" />
         <option value="$PROJECT_DIR$/src/Expand.java" />
         <option value="$PROJECT_DIR$/src/euglena_basic_stimuli.java" />
+        <option value="$PROJECT_DIR$/src/ProjectorCommand.java" />
+        <option value="$PROJECT_DIR$/src/ProjectorCommandException.java" />
+        <option value="$PROJECT_DIR$/src/ProjectorApplet.java" />
       </list>
     </option>
   </component>
@@ -229,7 +290,56 @@
     <panes>
       <pane id="Scope" />
       <pane id="ProjectPane">
-        <subPane />
+        <subPane>
+          <PATH>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="processing-intellij" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
+            </PATH_ELEMENT>
+          </PATH>
+          <PATH>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="processing-intellij" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="eug3" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+          </PATH>
+          <PATH>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="processing-intellij" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="eug3" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="src" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+          </PATH>
+          <PATH>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="processing-intellij" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="eug3" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="src" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="oldfiles" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
+          </PATH>
+        </subPane>
       </pane>
       <pane id="Scratches" />
       <pane id="PackagesPane" />
@@ -243,6 +353,11 @@
     <property name="project.structure.proportion" value="0.15" />
     <property name="project.structure.side.proportion" value="0.2" />
   </component>
+  <component name="RecentsManager">
+    <key name="MoveFile.RECENT_KEYS">
+      <recent name="$PROJECT_DIR$/src/oldfiles" />
+    </key>
+  </component>
   <component name="RunManager" selected="Application.ExampleApplet">
     <configuration default="true" type="Applet" factoryName="Applet">
       <option name="HTML_USED" value="false" />
@@ -389,14 +504,14 @@
     <editor active="true" />
     <layout>
       <window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
-      <window_info id="Messages" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.4006192" sideWeight="0.5" order="9" side_tool="false" content_ui="tabs" />
+      <window_info id="Messages" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.40014902" sideWeight="0.5" order="9" side_tool="false" content_ui="tabs" />
       <window_info id="Palette&#9;" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
       <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="9" side_tool="true" content_ui="tabs" />
       <window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="9" side_tool="false" content_ui="tabs" />
-      <window_info id="Run" active="true" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.2675112" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
+      <window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.2675112" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
       <window_info id="Terminal" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="10" side_tool="false" content_ui="tabs" />
       <window_info id="Designer" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
-      <window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.18503937" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
+      <window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.18503937" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
       <window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.328614" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
       <window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.2159031" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
       <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="4" side_tool="true" content_ui="tabs" />
@@ -456,16 +571,6 @@
     <option name="FILTER_TARGETS" value="false" />
   </component>
   <component name="editorHistoryManager">
-    <entry file="file://$PROJECT_DIR$/src/LEDControl.java">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="378">
-          <caret line="22" column="0" selection-start-line="22" selection-start-column="0" selection-end-line="22" selection-end-column="0" />
-          <folding>
-            <element signature="imports" expanded="true" />
-          </folding>
-        </state>
-      </provider>
-    </entry>
     <entry file="file://$PROJECT_DIR$/src/Camera.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="720">
@@ -498,7 +603,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/euglena_basic_stimuli.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/euglena_basic_stimuli.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
@@ -512,9 +617,7 @@
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="522">
           <caret line="40" column="35" selection-start-line="40" selection-start-column="35" selection-end-line="40" selection-end-column="35" />
-          <folding>
+          <folding />
-            <element signature="imports" expanded="true" />
-          </folding>
         </state>
       </provider>
     </entry>
@@ -526,14 +629,14 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/angleGather.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/angleGather.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="216">
           <caret line="12" column="0" selection-start-line="12" selection-start-column="0" selection-end-line="12" selection-end-column="0" />
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/euglena_basic_stimuli.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/euglena_basic_stimuli.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
@@ -547,9 +650,7 @@
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
+          <folding />
-            <element signature="imports" expanded="true" />
-          </folding>
         </state>
       </provider>
     </entry>
@@ -557,9 +658,7 @@
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
+          <folding />
-            <element signature="imports" expanded="true" />
-          </folding>
         </state>
       </provider>
     </entry>
@@ -567,9 +666,7 @@
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
+          <folding />
-            <element signature="imports" expanded="true" />
-          </folding>
         </state>
       </provider>
     </entry>
@@ -577,9 +674,7 @@
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
+          <folding />
-            <element signature="imports" expanded="true" />
-          </folding>
         </state>
       </provider>
     </entry>
@@ -587,9 +682,7 @@
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
+          <folding />
-            <element signature="imports" expanded="true" />
-          </folding>
         </state>
       </provider>
     </entry>
@@ -597,14 +690,12 @@
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
+          <folding />
-            <element signature="imports" expanded="true" />
-          </folding>
         </state>
       </provider>
     </entry>
     <entry file="file://$PROJECT_DIR$/src/LEDtest.java" />
-    <entry file="file://$PROJECT_DIR$/src/heatup.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/heatup.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="72">
           <caret line="4" column="0" selection-start-line="4" selection-start-column="0" selection-end-line="4" selection-end-column="0" />
@@ -612,7 +703,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/gradientWindow.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/gradientWindow.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
@@ -620,7 +711,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/angleGather.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/angleGather.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="216">
           <caret line="12" column="0" selection-start-line="12" selection-start-column="0" selection-end-line="12" selection-end-column="0" />
@@ -635,7 +726,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/snapshot.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/snapshot.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="126">
           <caret line="7" column="0" selection-start-line="7" selection-start-column="0" selection-end-line="7" selection-end-column="0" />
@@ -662,13 +753,6 @@
       </provider>
     </entry>
     <entry file="file://$PROJECT_DIR$/src/Procedure.java" />
-    <entry file="file://$PROJECT_DIR$/src/testing.java">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="180">
-          <caret line="5" column="10" selection-start-line="5" selection-start-column="10" selection-end-line="5" selection-end-column="10" />
-        </state>
-      </provider>
-    </entry>
     <entry file="file://$PROJECT_DIR$/src/clearDisplay.java" />
     <entry file="jar:///usr/lib/jvm/java-8-openjdk-amd64/jre/lib/rt.jar!/java/lang/Integer.class">
       <provider selected="true" editor-type-id="text-editor">
@@ -705,18 +789,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/ProjectorCommand.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/Presets.java">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="162">
-          <caret line="9" column="0" selection-start-line="9" selection-start-column="0" selection-end-line="9" selection-end-column="0" />
-          <folding>
-            <element signature="e#206#207#0" expanded="true" />
-            <element signature="e#236#237#0" expanded="true" />
-          </folding>
-        </state>
-      </provider>
-    </entry>
-    <entry file="file://$PROJECT_DIR$/src/Presets.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="36">
           <caret line="30" column="6" selection-start-line="30" selection-start-column="6" selection-end-line="30" selection-end-column="6" />
@@ -766,7 +839,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/merge.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/merge.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="828">
           <caret line="46" column="58" selection-start-line="46" selection-start-column="58" selection-end-line="46" selection-end-column="58" />
@@ -774,7 +847,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/shrinkingCircle.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/shrinkingCircle.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="630">
           <caret line="35" column="7" selection-start-line="35" selection-start-column="7" selection-end-line="35" selection-end-column="7" />
@@ -802,7 +875,7 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/ObjectRecognition.java">
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/ObjectRecognition.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="0">
           <caret line="0" column="6" selection-start-line="0" selection-start-column="6" selection-end-line="0" selection-end-column="6" />
@@ -810,20 +883,6 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/ProjectorApplet.java">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="378">
-          <caret line="21" column="0" selection-start-line="21" selection-start-column="0" selection-end-line="21" selection-end-column="0" />
-          <folding>
-            <element signature="imports" expanded="true" />
-            <element signature="e#545#546#0" expanded="true" />
-            <element signature="e#604#605#0" expanded="true" />
-            <element signature="e#1739#1740#0" expanded="true" />
-            <element signature="e#1779#1780#0" expanded="true" />
-          </folding>
-        </state>
-      </provider>
-    </entry>
     <entry file="file://$PROJECT_DIR$/src/LEDControl.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="516">
@@ -834,26 +893,6 @@
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/Menu.java">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="856">
-          <caret line="159" column="5" selection-start-line="159" selection-start-column="5" selection-end-line="159" selection-end-column="5" />
-          <folding>
-            <element signature="imports" expanded="true" />
-          </folding>
-        </state>
-      </provider>
-    </entry>
-    <entry file="file://$PROJECT_DIR$/src/EuglenaApplet.java">
-      <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="226">
-          <caret line="29" column="29" selection-start-line="29" selection-start-column="11" selection-end-line="29" selection-end-column="29" />
-          <folding>
-            <element signature="imports" expanded="true" />
-          </folding>
-        </state>
-      </provider>
-    </entry>
     <entry file="file://$PROJECT_DIR$/src/Rotate.java">
       <provider selected="true" editor-type-id="text-editor">
         <state relative-caret-position="1082">
@@ -888,24 +927,83 @@
     </entry>
     <entry file="file://$PROJECT_DIR$/src/Translate.java">
       <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="-664">
+        <state relative-caret-position="-844">
-          <caret line="22" column="33" selection-start-line="22" selection-start-column="33" selection-end-line="22" selection-end-column="33" />
+          <caret line="14" column="37" selection-start-line="14" selection-start-column="37" selection-end-line="14" selection-end-column="37" />
           <folding>
             <element signature="imports" expanded="true" />
           </folding>
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/src/euglena_basic_stimuli.java">
+    <entry file="file://$PROJECT_DIR$/src/Menu.java">
       <provider selected="true" editor-type-id="text-editor">
-        <state relative-caret-position="-807">
+        <state relative-caret-position="514">
-          <caret line="33" column="49" selection-start-line="33" selection-start-column="49" selection-end-line="33" selection-end-column="49" />
+          <caret line="221" column="23" selection-start-line="221" selection-start-column="23" selection-end-line="223" selection-end-column="89" />
           <folding>
             <element signature="imports" expanded="true" />
           </folding>
         </state>
       </provider>
     </entry>
+    <entry file="file://$PROJECT_DIR$/src/ProjectorCommand.java">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="0">
+          <caret line="0" column="17" selection-start-line="0" selection-start-column="17" selection-end-line="0" selection-end-column="17" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/testing.java">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="198">
+          <caret line="11" column="0" selection-start-line="11" selection-start-column="0" selection-end-line="11" selection-end-column="0" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/src/ProjectorCommandException.java">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="72">
+          <caret line="4" column="1" selection-start-line="4" selection-start-column="1" selection-end-line="4" selection-end-column="1" />
+          <folding>
+            <element signature="e#98#99#0" expanded="true" />
+            <element signature="e#128#129#0" expanded="true" />
+          </folding>
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/src/EuglenaApplet.java">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="0">
+          <caret line="0" column="30" selection-start-line="0" selection-start-column="30" selection-end-line="0" selection-end-column="30" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/src/oldfiles/euglena_basic_stimuli.java">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="630">
+          <caret line="35" column="0" selection-start-line="35" selection-start-column="0" selection-end-line="35" selection-end-column="0" />
+          <folding>
+            <element signature="imports" expanded="true" />
+          </folding>
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/src/ProjectorApplet.java">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-26">
+          <caret line="38" column="38" selection-start-line="38" selection-start-column="38" selection-end-line="38" selection-end-column="38" />
+          <folding>
+            <element signature="imports" expanded="true" />
+            <element signature="e#545#546#0" expanded="true" />
+            <element signature="e#604#605#0" expanded="true" />
+            <element signature="e#1744#1745#0" expanded="true" />
+            <element signature="e#1784#1785#0" expanded="true" />
+          </folding>
+        </state>
+      </provider>
+    </entry>
   </component>
   <component name="masterDetails">
     <states>

src/ProjectorApplet.java

@@ -27,14 +27,11 @@ class ProjectorApplet extends PApplet {
     @Override
     public void setup() {
         clear();
-        smooth();
+//        smooth();  // Smooth might create artefacts when animating?
-//        calibrator.activate();  //for testing
     }
 
     @Override
     public void draw() {
-        calibrator.draw(parent);
-
         ArrayList<Integer> entriesToRemove = new ArrayList<>();
         try {
             for (int i = 0; i < commandQueue.size(); i++) {
@@ -53,6 +50,9 @@ class ProjectorApplet extends PApplet {
         for (int i = entriesToRemove.size() - 1; i >= 0; i--) {
             commandQueue.remove(i);
         }
+
+
+        calibrator.draw(parent);
     }
 
     public void reset() {

src/ProjectorCommand.java

@@ -1,9 +1,3 @@
 public interface ProjectorCommand {
     boolean run(ProjectorApplet p) throws ProjectorCommandException;
 }
-
-class ProjectorCommandException extends Exception {
-    ProjectorCommandException(String message) {
-        super(message);
-    }
-}

src/ProjectorCommandException.java

@@ -0,0 +1,5 @@
+class ProjectorCommandException extends Exception {
+    ProjectorCommandException(String message) {
+        super(message);
+    }
+}

src/oldfiles/ObjectRecognition.java

@@ -1,3 +1,5 @@
+package oldfiles;
+
 class EuglenaCounter {
 
     int roiX, roiY, roiWidth, roiHeight, lastMillis, avgTime;

src/oldfiles/Presets.java

@@ -1,4 +1,4 @@
-/*
+package oldfiles;/*
 Previously implemented programs which we need to redo using classes
   case 2 :           // Starts clear program
     clearScreen();